maarten-devries

Pinned Repositories

ACTIONet
ACTIONet single-cell analysis framework
0 0 00
bionty-base
Access public biological ontologies.
Language:Python00
genevector
Vector representations of gene co-expression in single cell RNAseq.
Language:Python1 0 00
MIT-6.874-Project
This is the repository for our term project for MIT 6.874 - Computational Systems Biology: Deep Learning in the Life Sciences.
Language:Jupyter Notebook2 1 02
pertpy
Perturbation Analysis in the scverse ecosystem.
Language:Python0 0 00
scanpy
Single-cell analysis in Python. Scales to >1M cells.
Language:Python0 0 00
scarches
Reference mapping for single-cell genomics
Language:Jupyter Notebook0 0 00

maarten-devries's Repositories

maarten-devries/MIT-6.874-Project
This is the repository for our term project for MIT 6.874 - Computational Systems Biology: Deep Learning in the Life Sciences.
Language:Jupyter Notebook2 1 02
maarten-devries/genevector
Vector representations of gene co-expression in single cell RNAseq.
Language:Python1 0 00
maarten-devries/ACTIONet
ACTIONet single-cell analysis framework
0 0 00
maarten-devries/bionty-base
Access public biological ontologies.
Language:Python00
maarten-devries/pertpy
Perturbation Analysis in the scverse ecosystem.
Language:Python0 0 00
maarten-devries/scanpy
Single-cell analysis in Python. Scales to >1M cells.
Language:Python0 0 00
maarten-devries/scarches
Reference mapping for single-cell genomics
Language:Jupyter Notebook0 0 00
maarten-devries/symphonypy
Port of symphony algorithm of single-cell reference atlas mapping to Python
Language:Jupyter Notebook0 0
maarten-devries/UpSetPlot
Draw UpSet plots with Matplotlib
Language:Python0 0