Pinned Repositories
emperor
Emperor a tool for the analysis and visualization of large microbial ecology datasets
qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
dogs
Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"
ITTDMMAWHTTTF
1.21 jigawatts????
keystats
A simple keylogger for macOS
phd-thesis
Doctoral dissertation
xcode-theme
Xcode Default-lookalike theme for TextMate and Sublime Text 2.
macfusion2
Macfusion2
qiime2
Source for the QIIME 2 Framework (Q2F).
ElDeveloper's Repositories
ElDeveloper/keystats
A simple keylogger for macOS
ElDeveloper/q2-emperor
ElDeveloper/agc-snakemake
ElDeveloper/cli
GitHub’s official command line tool
ElDeveloper/emperor
ElDeveloper/emperor-feedstock
A conda-smithy repository for emperor.
ElDeveloper/empress
A very fast and scalable phylogenetic visualization viewer
ElDeveloper/empress-analyses
ElDeveloper/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
ElDeveloper/fido
Multinomial Logistic-Normal Models (really fast)
ElDeveloper/gemelli
Gemelli is a toolbox for running both Robust Aitchison PCA (RPCA) and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
ElDeveloper/GNPS_Workflows
Public Workflows at GNPS
ElDeveloper/hammerspoon
Staggeringly powerful macOS desktop automation with Lua
ElDeveloper/metagenomics_pooling_notebook
Jupyter notebook to assist wet lab shotgun pipeline
ElDeveloper/metagenomics_pooling_notebook-1
Jupyter notebook to assist wet lab shotgun pipeline
ElDeveloper/mmrm
Mixed Models for Repeated Measures (MMRM) in R.
ElDeveloper/nutrition
ElDeveloper/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
ElDeveloper/platypus
Confirming specific taxonomic groups within your samples.
ElDeveloper/py-codacore
ElDeveloper/q2-diversity
ElDeveloper/q2-longitudinal
QIIME 2 plugin for paired sample comparisons
ElDeveloper/qiime2
Official repository for the QIIME 2 framework
ElDeveloper/qiita
Qiita - A QIIME databasing effort
ElDeveloper/qp-woltka
ElDeveloper/SHOGUN
SHallow shOtGUN profiler
ElDeveloper/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
ElDeveloper/woltka
versatile metagenome classifier
ElDeveloper/worker
Emperor's worker
ElDeveloper/zebra_filter
Filtering out false taxonomic hits from shotgun sequencing based on genome coverage