QIIME 2

Pinned Repositories

distributions
Language:Makefile1 6 115
docs
Language:Python21 14 18758
q2-dada2
QIIME 2 plugin wrapping DADA2
Language:Python19 11 7436
q2-feature-classifier
QIIME 2 plugin supporting taxonomic classification
Language:Python18 11 9338
q2-types
Language:Python17 9 11641
q2cli
Command line interface for QIIME 2
Language:Python19 10 11424
q2galaxy
Generate Galaxy tool descriptions automatically from QIIME 2 actions.
Language:Python19 9 2118
q2studio
Prototype graphical user interface for QIIME 2
Language:JavaScript15 9 5520
q2view-old
A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
Language:JavaScript14 9 6117
qiime2
Official repository for the QIIME 2 framework.
Language:Python481 39 366242

QIIME 2's Repositories

qiime2/qiime2
Official repository for the QIIME 2 framework.
Language:Python481 39 366242
qiime2/docs
Language:Python21 14 18758
qiime2/q2cli
Command line interface for QIIME 2
Language:Python19 10 11424
qiime2/q2galaxy
Generate Galaxy tool descriptions automatically from QIIME 2 actions.
Language:Python19 9 2118
qiime2/q2-types
Language:Python17 9 11641
qiime2/q2view
A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
Language:TypeScript14 7 51
qiime2/q2-fragment-insertion
Language:Python13 13 3717
qiime2/q2-longitudinal
QIIME 2 plugin for paired sample comparisons
Language:Python9 11 8418
qiime2/q2-composition
Language:Python6 11 4527
qiime2/q2-sample-classifier
QIIME 2 plugin for machine learning prediction of sample data.
Language:Python6 13 9936
qiime2/q2-vsearch
vsearch plugin for QIIME 2
Language:Python6 12 3920
qiime2/q2-fmt
q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!
Language:Python4 9 3211
qiime2/q2-phylogeny
Phylogenetic reconstruction, and operations on phylogenetic trees.
Language:Python4 12 2319
qiime2/q2-quality-control
A QIIME 2 plugin for quality control of sequence and feature data
Language:Python4 10 2617
qiime2/q2-cutadapt
Language:Python3 8 1818
qiime2/q2-metadata
Language:Python3 9 2317
qiime2/q2-taxa
Language:Python3 11 8329
qiime2/q2-feature-table
QIIME 2 plugin supporting operations on feature tables.
Language:Python2 11 13337
qiime2/distributions
Language:Makefile1 6 115
qiime2/galaxy-tools
Official QIIME 2 tools for Galaxy
Language:Python1 7 235
qiime2/library
A website for sharing QIIME 2 Plugins
Language:Svelte1 3 31
qiime2/q2-quality-filter
Quality filtering for QIIME2
Language:Python1 10 2816
qiime2/q2-stats
Language:Python1 9 47
qiime2/q2-vizard
The first choice of wizard lizards for interactive, generalized microbiome data visualization!
Language:Python1 8 119
qiime2/action-library-packaging
Language:Python8 15
qiime2/data302
Language:Python8 410
qiime2/library-plugins
Stores a list of the repos that are included in the QIIME 2 library
2
qiime2/q2-mystery-stew
This plugin exists to define integration tests between interfaces and the framework.
Language:Python7 66
qiime2/q2view-gallery
Language:HTML1 03
qiime2/qiime2.org
qiime2.org source
Language:JavaScript3 22