qiime2/q2-fmt

Issues

• Refactor Helper methods in Utils.py

  #93 opened 2 months ago by cherman2
  0

• q2-boots but for peds and pprs

  #94 opened 2 months ago by cherman2
  0

• ref: peds-sim

  #97 opened 2 months ago by cherman2
  0

• peds-heatmap should filter TP and Subjects not peds.

  #85 opened 2 months ago by cherman2
  0

• use stats json_replace

  #100 opened 2 months ago by cherman2
  0

• q2-fmt feature-peds is really slow on huge datasets

  #70 opened a year ago by cherman2
  0

• ADD Feature Peds permutation test

  #108 opened 2 months ago by cherman2
  0

• q2-fmt should filter references that are in the column but not in the feature table.

  #69 opened 3 months ago by cherman2
  0

• PPRS Method

  #81 opened 3 months ago by cherman2
  0

• q2-fmt sourcetracker stacked bar

  #96 opened 3 months ago by cherman2
  0

• q2-fmt sourcetracker

  #95 opened 3 months ago by cherman2
  0

• After stats are made for facetted Dist1D, engraftment pipeline should accept group columns

  #80 opened 6 months ago by cherman2
  0

• Engraftment pipeline -> CC pipeline

  #87 opened 5 months ago by cherman2
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• Add parameter, method and output descriptions

  #63 opened 5 months ago by cherman2
  0

• Distance to Control parameter

  #73 opened 8 months ago by cherman2
  0

• Add tests for Level-delim Parameter

  #60 opened a year ago by cherman2
  0

• BUG: columntable in vega spec should group by group and not measure

  #61 opened 2 years ago by cherman2
  1

• metadata column is equal to metadata.index.name function

  #52 opened 2 years ago by cherman2
  0

• drop_dud_timepoint parameter

  #40 opened 2 years ago by cherman2
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• Feature peds does not display full taxonomic label

  #50 opened 2 years ago by cherman2
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• Checking column type function

  #53 opened 2 years ago by cherman2
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• test_beta_dists_with_same_donor_for_all_samples failing

  #41 opened 2 years ago by cherman2
  0

• Installation documentation error: No Module found: frictionless

  #31 opened 3 years ago by jwdebelius
  8

• BUG: group_timepoints fails when using Beta Diversity with a single donor

  #26 opened 3 years ago by lizgehret
  1

• Constraining hypotheses (group_timepoints) based on existance of subject_column

  #27 opened 3 years ago by lizgehret
  0

• imp: add semantic validation for AnnotatedTSVDirFmt to only allow subjects to appear (at most) once per group

  #20 opened 3 years ago by lizgehret
  1

• Check for increase in alpha/beta diversity from baseline

  #14 opened 3 years ago by lizgehret
  2

• Beta diversity: new hypothesis

  #16 opened 3 years ago by lizgehret
  1

• Add hypotheses from Greg's autism study

  #13 opened 3 years ago by lizgehret
  2

• Beta diversity: check for decrease in distance to donor

  #15 opened 3 years ago by lizgehret
  1

• Add hypothesis for control comparison

  #12 opened 3 years ago by lizgehret
  4

• Handle "integer/numeric-ish" subject and sample IDs better

  #9 opened 3 years ago by ebolyen
  0