Pinned Repositories
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
built-iab
The latest Jupyter notebooks for An Introduction to Applied Bioinformatics.
galaxy
Data intensive science for everyone.
js-bootcamp
q2-sqrt
Plugin made at FAES18 as an example
q2galaxy
Prototype interface for automatically generating Galaxy tools from QIIME 2 actions
q2studio
Prototype graphical user interface for QIIME 2
q2view-old
A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
qiime2
Official repository for the QIIME 2 framework.
scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
ebolyen's Repositories
ebolyen/q2galaxy
Prototype interface for automatically generating Galaxy tools from QIIME 2 actions
ebolyen/developing-with-qiime2
Developing with QIIME 2
ebolyen/ebolyen.github.io
ebolyen/environment-files
ebolyen/galaxy-tools
WIP: not ready for use yet
ebolyen/gneiss
compositional statistics and visualization toolbox
ebolyen/package-integration
ebolyen/q2-assembly
QIIME 2 plugin for (meta)genome assembly.
ebolyen/q2-composition
QIIME2 plugin for compositional data analysis
ebolyen/q2-demux
Map sequence barcodes to sample identifiers.
ebolyen/q2-diversity
ebolyen/q2-diversity-lib
ebolyen/q2-feature-table
Official QIIME 2 plugin supporting normalization of sample by feature tables.
ebolyen/q2-fmt
WIP
ebolyen/q2-gneiss
QIIME2 plugin for Gneiss
ebolyen/q2-moshpit
MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking
ebolyen/q2-sapienns
ebolyen/q2-stats
ebolyen/q2-types
Definitions of common QIIME 2 types.
ebolyen/q2-types-genomics
QIIME 2 types for genomics plugins.
ebolyen/q2cli
Command line interface for QIIME 2
ebolyen/q2dataflow
ebolyen/q2lint
Linter for official QIIME 2 software.
ebolyen/qiime2
The name says it all...
ebolyen/RESCRIPt
REference Sequence annotation and CuRatIon Pipeline
ebolyen/scikit-bio
Core objects, functions and statistics for working with biological data in Python.
ebolyen/scikit-bio-feedstock
A conda-smithy repository for scikit-bio.
ebolyen/static-site-infrastructure
ebolyen/view.qiime.org
ebolyen/vm-playbooks
Ansible playbooks for QIIME 2 environments