Pinned Repositories
autism-fmt1
cookiecutter-qiime2-plugin
Template to help you create your new QIIME 2 plugin. 🚀
developing-with-qiime2
Your guide for writing, testing, and distributing QIIME 2 plugins, interfaces, and documentation.
genome-sampler
longitudinal-notebooks
mockrobiota
A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
sourcetracker2
SourceTracker2
student-microbiome-project
Central repository for data and analysis tools for the StudentMicrobiomeProject.
tax-credit
A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools
tax-credit-data
raw data from tax-credit project
caporaso-lab's Repositories
caporaso-lab/mockrobiota
A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
caporaso-lab/sourcetracker2
SourceTracker2
caporaso-lab/tax-credit-data
raw data from tax-credit project
caporaso-lab/longitudinal-notebooks
caporaso-lab/genome-sampler
caporaso-lab/pretrained-feature-classifiers
caporaso-lab/q2-books
A prototype collection of JupyterBooks documenting QIIME 2
caporaso-lab/tax-credit-code
Microbiome benchmarking code and jupyter notebooks from the tax-credit project
caporaso-lab/caporaso-lab.github.io
Lab website
caporaso-lab/covid-ci
Continuous deployment of covid analyses using Concourse CI
caporaso-lab/crc-udca2
Analyses for UDCA Cancer Research submission
caporaso-lab/developing-with-qiime2
Your guide for writing, testing, and distributing QIIME 2 plugins, interfaces, and documentation.
caporaso-lab/ecuador-leptospira
caporaso-lab/exmp-paper1
Data supporting the NAU EXMP-1 and EXMP-2 (EXercise Microbiome Projects)
caporaso-lab/SurveySync
Google Sheets Add-On to facilitate sync and validation of 3rd-party survey data
caporaso-lab/code-of-conduct
caporaso-lab/cookiecutter-qiime2-plugin
Template to help you create your new QIIME 2 plugin. 🚀
caporaso-lab/.github
caporaso-lab/az-covid-1
Scripts supporting an initial investigation of SARS-CoV-2 genomes from Arizona
caporaso-lab/docker-galaxy-stable
:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
caporaso-lab/gsheets-resource
caporaso-lab/humanure-paper1
caporaso-lab/q2-boots
caporaso-lab/q2-dwq2
Educational plugin for use with *Developing with QIIME 2* (DWQ2).
caporaso-lab/q2-phylogenomics
Phylogenomics toolkit and pipelines
caporaso-lab/qiime2.org-home
Prototype for updated qiime2.org homepage.
caporaso-lab/sample-classifier-ms
Manuscript describing q2-sample-classifier
caporaso-lab/sc18-poster
caporaso-lab/simple-remote-directory-resource
Concourse resource for handling remote directories
caporaso-lab/teaching-website-source
Sphinx source for my teaching website