jwdebelius
Assistant Scientist at Johns Hopkins University. I'm interested in better ways to understand the relationship between the human microbiome and health outcomes.
Pinned Repositories
2022.1-faes-tutorial
JupyterBook for QIIME 2 FAES January 2022 workshop
Absloute-Power
Validation of empirical power code.
ag_analysis
American Gut Analysis Notebooks
American-Gut
American Gut open-access data and IPython notebooks
american-gut-web
The website for the American Gut Project participant portal
ancomP
Analysis of Composition of Microbiomes
avengers-assemble
q2-sidle
A QIIME 2 implementation of SMURF
jwdebelius's Repositories
jwdebelius/q2-sidle
A QIIME 2 implementation of SMURF
jwdebelius/avengers-assemble
jwdebelius/2022.1-faes-tutorial
JupyterBook for QIIME 2 FAES January 2022 workshop
jwdebelius/BIRDMAn
Bayesian Inferential Regression for Differential Microbiome Analysis
jwdebelius/break_4w
A repository for handling a metadata dictionary (and breaking the fourth wall)
jwdebelius/diabetes_project
jwdebelius/docs
Source repository for https://docs.qiime2.org
jwdebelius/empress
A fast and scalable phylogenetic tree viewer for microbiome data analysis
jwdebelius/fandomstats
Fandom Statistics
jwdebelius/gibboda
Gender Isn't Binary But Other Data Are
jwdebelius/InSilicoSeq
:rocket: A sequencing simulator
jwdebelius/mplcairo
A (new) cairo backend for Matplotlib.
jwdebelius/mvtests
mvtests: a suite of functions for testing genetic associations of multiple traits (a.k.a. cross-phenotype associations)
jwdebelius/newsies-survey
jwdebelius/parse_kraken2_report
Taxonomically informed parsing of kraken2 report output.
jwdebelius/q2-ancombc
qiime2 plugin for ANCOMBC
jwdebelius/q2-composition
QIIME2 plugin for compositional data analysis
jwdebelius/q2-diversity
jwdebelius/q2-feature-table
QIIME 2 plugin supporting operations on feature tables.
jwdebelius/q2-fmt
Plugin for analysing the efficacy of fecal microbiota transplants
jwdebelius/q2-phylogeny
Phylogenetic reconstruction, and operations on phylogenetic trees.
jwdebelius/q2-sample-classifier
QIIME 2 plugin for machine learning prediction of sample data.
jwdebelius/q2-taxa
jwdebelius/qiime
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
jwdebelius/qurro
Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
jwdebelius/redbiom
Sample search by metadata and features
jwdebelius/RESCRIPt
REference Sequence annotation and CuRatIon Pipeline
jwdebelius/sepp-refs
jwdebelius/seqan
SeqAn's official repository.
jwdebelius/SMURF