Issues
- 0
ENH: Add genome_dict functions to `GenesDirectoryFormat` and `ProteinsDirectoryFormat`.
#344 opened by VinzentRisch - 0
MAINT: Move partitioning and collating actions from q2-moshpit to q2-types
#332 opened by VinzentRisch - 0
- 1
IMP: PacBio Phred Offset is Incorrectly Translated
#329 opened by hagenjp - 0
add manifest formats to q2-types, and update throughout the shotgun distro to use those
#330 opened by colinvwood - 1
- 0
ENH: add `ReferenceDB[HMMER]` semantic type
#327 opened by Sann5 - 2
- 1
iteritems deprecation warning on merge_seqs
#333 opened by lxsteiner - 5
FEAT: Importing sequence data from BIOM files
#315 opened by peterjc - 1
Patch to work with Pandas 2.x
#310 opened by tillea - 0
- 0
ENH: Semantic type for HMMER database
#320 opened by Sann5 - 0
- 1
zipped fasta gets imported and fails silently
#194 opened by BenKaehler - 1
FEAT: Importing multiplexed paired-end data with separated barcode sequence files
#300 opened by Keegan-Evans - 1
Blast6 file empty
#304 opened by fabio-marcelo - 0
Migrate FeatureMap from q2-types-genomics to q2-types
#298 opened by wasade - 2
EMP formats require Phred designation
#301 opened by nbokulich - 1
add usage examples to artifact classes
#288 opened by gregcaporaso - 0
add `ImmutableMetadata` semantic type
#292 opened by gregcaporaso - 0
deprecation warning on import of type `SampleData[PairedEndSequencesWithQuality]` with format `PairedEndFastqManifestPhred33V2`
#290 opened by gregcaporaso - 1
new format / transformer for single-end demuliplexed files named by sample id
#286 opened by gregcaporaso - 1
- 2
- 0
Conflict with biom-format 2.1.12
#279 opened by tillea - 0
ENH: transformer for BLAST6Format --> Metadata
#273 opened by nbokulich - 0
ENH: new type + format for BLASTDB v5
#275 opened by nbokulich - 1
Transformer from Newick to dendropy
#269 opened by chrysn - 1
- 0
Support FASTA files which contain all reads per sample (i.e. not just representative seqs)
#197 opened by cduvallet - 5
- 2
Move matplotlib pin to >=3.2
#232 opened by ChrisKeefe - 1
Laneless Casava transformers are broken
#235 opened by ebolyen - 4
- 1
Validate paired-end sets are record-matched
#207 opened by thermokarst - 2
qiime 'taxonomy' tabulate error
#231 opened by danielm710 - 0
DEP: pandas 0.25.x updates
#227 opened by thermokarst - 1
- 1
- 1
Differential type
#211 opened by mortonjt - 11
- 0
- 2
Metadata-compatible Manifest formats
#208 opened by thermokarst - 0
Validate that per-sample-seqs sets aren't empty
#206 opened by thermokarst - 0
- 0
ENH: transformer: FeatureTable[*] -> Metadata
#185 opened by nbokulich - 1
- 0
DNAFASTAFormat and AlignedDNAFASTAFormat should check for duplicate ids during full validation
#198 opened by gregcaporaso - 0
Allow additional columns in `AlphaDiversityFormat`
#182 opened by ebolyen