wasade
Programmer analyst, Scientific Director (American Gut / Microsetta Initiative) | Knight Lab | UC San Diego Dept. Pediatrics
UCSD - Dept. of PediatricsSan Diego, CA
Pinned Repositories
exhaustive
mxdx
Generalized multiplexing / demultiplexing for FASTQ/FASTA/SAM
powerpointing-is-rude
A really stupid terminal slide presenter
q2-humann2
A QIIME2 plugin for running HUMAnN2
readgood
A speedreader inspired by Spritz and Optimal Recognition Point
serve-gg2
sublime
Easy job submission to Torque-based clusters
wasade's Repositories
wasade/exhaustive
wasade/mxdx
Generalized multiplexing / demultiplexing for FASTQ/FASTA/SAM
wasade/serve-gg2
wasade/apd-core
Core repo for
wasade/ariadne
Ariadne, a de Bruijn graph-based program for barcoded read deconvolution
wasade/bioconda-recipes
Conda recipes for the bioconda channel.
wasade/biom-format
The Biological Observation Matrix (BIOM) Format Project
wasade/biom-format-feedstock
A conda-smithy repository for biom-format.
wasade/docs
Source repository for https://docs.qiime2.org
wasade/duckdb-web
DuckDB website and documentation
wasade/GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
wasade/markdown-cv
a simple template to write your CV in a readable markdown file and use CSS to publish/print it.
wasade/microsetta-interface
The Microsetta participant facing user interface
wasade/microsetta-private-api
A private microservice to support The Microsetta Initiative
wasade/q2-diversity
wasade/q2-diversity-lib
wasade/q2-feature-table
Official QIIME 2 plugin supporting normalization of sample by feature tables.
wasade/qp-knight-lab-processing
wasade/redbiom
wasade/rust-wfa2
Rust binding for WFA2-lib
wasade/scikit-bio
Core objects, functions and statistics for working with biological data in Python.
wasade/scikit-bio-feedstock
A conda-smithy repository for scikit-bio.
wasade/scikit-bio-tutorials
Interactive tutorials for using scikit-bio in biological research
wasade/shotgun-torch
wasade/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
wasade/tax2tree
Automated taxonomy decoration onto a tree
wasade/unifrac
wasade/unifrac-binaries
wasade/unifrac-colab-notebooks
Notebooks for use on Google Colabs
wasade/woltka
Web of Life Toolkit App