Conflict with biom-format 2.1.12
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Bug Description
There are test suite errors when using biom-format 2.1.12-
Steps to reproduce the behavior
The Debian package of q2-types is running into errors in out CI infrastructure when running
py.test-3 --cov=q2_types
this results in the following error:
FAILED q2_types/feature_table/tests/test_transformer.py::TestTransformers::test_biom_table_to_biom_v210_format
FAILED q2_types/feature_table/tests/test_transformer.py::TestTransformers::test_biom_v100_format_to_biom_table
FAILED q2_types/feature_table/tests/test_transformer.py::TestTransformers::test_biom_v100_format_to_biom_v210_format
FAILED q2_types/feature_table/tests/test_transformer.py::TestTransformers::test_biom_v210_format_to_biom_table
================== 4 failed, 350 passed, 12 warnings in 5.20s ==================
You can see a complete build log here
Expected behavior
No failure in test suite.
Computation Environment
- OS: Debian GNU Linux (unstable)
- QIIME 2 Release 2022.2.0