Pinned Repositories
ANCOM
R scripts for Analysis of Composition of Microbiomes (ANCOM).
gapped
ancestral state reconstruction
mm-labs
ZPEM2311 Mathematical Modelling Lab Notebooks
mm-project-2020
Examples and stubs to form the basis of the ZPEM2311 Mathematical Modelling Major Project for 2020.
paycheck
tAxonomY Classification Expected Composition
q2-clawback
This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org.
q2-makarsa
A QIIME 2 plugin to generate and visualise microbial networks.
readytowear
Ready-made Taxonomic Weights Repository
why-bother
Some ideas for non-stationary, rooted, strand-symmetric phylogenetic tree discovery.
BenKaehler's Repositories
BenKaehler/readytowear
Ready-made Taxonomic Weights Repository
BenKaehler/q2-makarsa
A QIIME 2 plugin to generate and visualise microbial networks.
BenKaehler/q2-clawback
This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org.
BenKaehler/paycheck
tAxonomY Classification Expected Composition
BenKaehler/gapped
ancestral state reconstruction
BenKaehler/mm-labs
ZPEM2311 Mathematical Modelling Lab Notebooks
BenKaehler/mm-project-2020
Examples and stubs to form the basis of the ZPEM2311 Mathematical Modelling Major Project for 2020.
BenKaehler/why-bother
Some ideas for non-stationary, rooted, strand-symmetric phylogenetic tree discovery.
BenKaehler/ANCOM
R scripts for Analysis of Composition of Microbiomes (ANCOM).
BenKaehler/BenKaehler.github.io
Ben's Website
BenKaehler/cogent3
Comparative Genomics Toolkit 3
BenKaehler/docs
Source repository for https://docs.qiime2.org
BenKaehler/game17
Run game17
BenKaehler/mm-major-project-2020
BenKaehler/mockrobiota-utilities
Utility scripts for use with mockrobiota
BenKaehler/pretrained-feature-classifiers
BenKaehler/pycogent
PyCogent: Official repository for software and unit tests
BenKaehler/q2-extra-classifier
BenKaehler/q2-feature-classifier
QIIME 2 plugin supporting taxonomic classification
BenKaehler/q2-feature-table
QIIME 2 plugin supporting operations on feature tables.
BenKaehler/q2-ipcress
QIIME 2 wrapper for ipcress, an in-silico PCR experiment simulation system
BenKaehler/q2-sample-classifier
QIIME 2 plugin for machine learning prediction of sample data.
BenKaehler/redbiom
Sample search by metadata and features
BenKaehler/RESCRIPt
REference Sequence annotation and CuRatIon Pipeline
BenKaehler/scikit-learn
scikit-learn: machine learning in Python
BenKaehler/short-read-tax-assignment
A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools
BenKaehler/silva-trees
Some SILVA trees
BenKaehler/SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
BenKaehler/tax-credit-code
Microbiome benchmarking code and jupyter notebooks from the tax-credit project
BenKaehler/tax-credit-data
raw data from tax-credit project