Pinned Repositories
gneiss
compositional data analysis toolbox
mmvec
Neural networks for microbe-metabolite interaction analysis
songbird
Vanilla regression methods for microbiome differential abundance analysis
catvae
Categorical Variational Autoencoders
deepblast
Neural Networks for Protein Sequence Alignment
ancomP
Analysis of Composition of Microbiomes
asd_multiomics_analyses
Jupyter notebooks behind "Multi-omic analysis along the gut-brain axis points to a functional architecture of autism"
q2-ancombc
qiime2 plugin for ANCOMBC
q2stats-workshops
Repository of qiime2 workshops to explore microbial ecology
scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
mortonjt's Repositories
mortonjt/q2-ancombc
qiime2 plugin for ANCOMBC
mortonjt/asd_multiomics_analyses
Jupyter notebooks behind "Multi-omic analysis along the gut-brain axis points to a functional architecture of autism"
mortonjt/q2-differential
A collection of common differential abundance techniques
mortonjt/cockatoo
Birds are cool right?
mortonjt/GetData
Get microbiome data from various repos
mortonjt/iv-analysis
mortonjt/micro-stats-bench
A collection of simulated and real benchmarks for microbiome methodological tutorials and benhcmarks
mortonjt/atlas
ATLAS - Three commands to start analyzing your metagenome data
mortonjt/catvae
Categorical Variational Autoencoders
mortonjt/ColabFold
Making Protein folding accessible to all!
mortonjt/cookie-cutter
A templating workflow for new data analysis projects
mortonjt/deepblast
mortonjt/differential
mortonjt/empress
A fast and scalable phylogenetic tree viewer for microbiome data analysis
mortonjt/environment-files
mortonjt/gapc
Bellman's GAP compiler
mortonjt/gcp3
Genome coverage statistics using poisson point processes
mortonjt/integrated-omics
mortonjt/metadata-ideas
mortonjt/ms2deepscore
Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
mortonjt/mudata
Multimodal Data (.h5mu) implementation for Python
mortonjt/NormAE
Batch effects removal method based on deep autoencoder and adversarial learning
mortonjt/Permutation_test
mortonjt/q2-fido
qiime2 plugin for Fido for high dimensional compositional time series analysis
mortonjt/q2-matchmaker
A qiime2 plugin for case-control differential abundance analysis
mortonjt/q2-sample-classifier
QIIME 2 plugin for machine learning prediction of sample data.
mortonjt/scikit-bio
Core objects, functions and statistics for working with biological data in Python.
mortonjt/scikit-bio-tutorials
Interactive tutorials for using scikit-bio in biological research
mortonjt/swa_gaussian
Code repo for "A Simple Baseline for Bayesian Uncertainty in Deep Learning"
mortonjt/tm-vec