Pinned Repositories
gneiss
compositional data analysis toolbox
mmvec
Neural networks for microbe-metabolite interaction analysis
songbird
Vanilla regression methods for microbiome differential abundance analysis
catvae
Categorical Variational Autoencoders
deepblast
Neural Networks for Protein Sequence Alignment
ancomP
Analysis of Composition of Microbiomes
asd_multiomics_analyses
Jupyter notebooks behind "Multi-omic analysis along the gut-brain axis points to a functional architecture of autism"
q2-ancombc
qiime2 plugin for ANCOMBC
q2stats-workshops
Repository of qiime2 workshops to explore microbial ecology
scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
mortonjt's Repositories
mortonjt/bayesian-regression
mortonjt/AG-KNN
mortonjt/biplot
A repository specifically designed for making biplots
mortonjt/bucklefish
mortonjt/calour
exploratory and interactive microbiome analyses based on heatmaps
mortonjt/conda-recipes
conda recipes for bioinformatic tools like blast+, infernal, etc.
mortonjt/didyprog
Differentiable Dynamic Programming
mortonjt/docs
Source repository for https://docs.qiime2.org
mortonjt/dsFDR
descrete False Discovery Rate method
mortonjt/edward
A library for probabilistic modeling, inference, and criticism. Deep generative models, variational inference. Runs on TensorFlow.
mortonjt/empress-feedstock
Conda recipe for empress
mortonjt/joyous_klingon
mortonjt/labman
lab manager for plate maps and sequence flows
mortonjt/models
Models and examples built with TensorFlow
mortonjt/ms_analyses
mortonjt/munchkin-dumpling
mortonjt/oecophylla
shotgun pipeline
mortonjt/phd-thesis-1
Doctoral dissertation
mortonjt/pls-balances
mortonjt/q2-composition
QIIME2 plugin for compositional data analysis
mortonjt/q2-diversity
mortonjt/q2-pfdr
mortonjt/q2-phylofactor
mortonjt/q2-phylogeny
Phylogenetic reconstruction, and operations on phylogenetic trees.
mortonjt/regressionbenchmark
mortonjt/Sampled-Softmax-PyTorch
Sampled Softmax Implementation for PyTorch
mortonjt/SBPR-FPMC
Sequential Bayesian Personalized Ranking using Factorized Personalized Markov Chains
mortonjt/statsmodels
Statsmodels: statistical modeling and econometrics in Python
mortonjt/teddybear
mortonjt/tensorflow
Computation using data flow graphs for scalable machine learning