Pinned Repositories
aspiration-analysis-public
Public repo associated with Duvallet et al (2018) aerodigestive microbiome paper
cduvallet.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
evolution_game
Game to teach concepts about mutation, diversity, selection, and evolution
match_hmdb
Search for mass-matches between a feature table with mz's and all HMDB metabolites
microbiomeHD
Cross-disease comparison of case-control gut microbiome studies
phd-docs
Important documents related to my PhD
phd-thesis
Repo with my MIT thesis (non-forked version, to allow for LFS)
phdchat-philosophies
#PhDChat for the Alm lab summit: philosophies on coding and data for comp PhD students
q2-dbotu
QIIME 2 plugin for distribution-based clustering
q2-perc-norm
QIIME2 plugin for percentile normalization to correct for batch effects in microbiome case-control studies
cduvallet's Repositories
cduvallet/microbiomeHD
Cross-disease comparison of case-control gut microbiome studies
cduvallet/q2-perc-norm
QIIME2 plugin for percentile normalization to correct for batch effects in microbiome case-control studies
cduvallet/cduvallet.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
cduvallet/aspiration-analysis-public
Public repo associated with Duvallet et al (2018) aerodigestive microbiome paper
cduvallet/match_hmdb
Search for mass-matches between a feature table with mz's and all HMDB metabolites
cduvallet/phd-thesis
Repo with my MIT thesis (non-forked version, to allow for LFS)
cduvallet/phdchat-philosophies
#PhDChat for the Alm lab summit: philosophies on coding and data for comp PhD students
cduvallet/evolution_game
Game to teach concepts about mutation, diversity, selection, and evolution
cduvallet/phd-docs
Important documents related to my PhD
cduvallet/q2-dbotu
QIIME 2 plugin for distribution-based clustering
cduvallet/amr-risk
cduvallet/calmap
Calendar heatmaps from Pandas time series data
cduvallet/concat_datasets
Scripts to concatenate multiple datasets and process them together, for use with population estimation project
cduvallet/dbotu3
Distribution-based OTU calling
cduvallet/docs
Source repository for https://docs.qiime2.org
cduvallet/donor-selection
Exploring donor selection approaches for FMT trials
cduvallet/drug-spending
cduvallet/mbiome-data-viz
Presentation for Cornell microbiome data hackathon (April 2019)
cduvallet/metabolomics
cduvallet/ms2_predict
Predict chemical class from MS2 data
cduvallet/pyjanitor
Python implementation of R package Janitor
cduvallet/q2-diversity
cduvallet/q2-feature-table
QIIME 2 plugin supporting operations on feature tables.
cduvallet/q2-sample-classifier
QIIME 2 plugin for machine learning prediction of sample data.
cduvallet/q2-types
Definitions of common QIIME 2 types.
cduvallet/research-parasite-editorial
GigaScience editorial for the Research Parasite award
cduvallet/sewage-variability
Temporal and geographic variability of 16S and metabolomics from residential sewage
cduvallet/util
Helpful scripts for downloading, processing, and manipulating 16S data
cduvallet/dev-docs
Developer documentation for QIIME 2
cduvallet/sourcingboston
A Food Security and Resilience Hackathon