biocore/qiime

Issues

• Multiple_join_paired_ends.py output files names

  #2233 opened 2 years ago by chwang740
  0

• ValueError: Could not interpret optimizer identifier: <module 'scipy.optimize' from 'C:\\Users\\shani\\Anaconda3\\lib\\site-packages\\scipy\\optimize\\__init__.py'>

  #2232 opened 3 years ago by shanikumarpatel
  0

• Problems using count_seqs.py with joined reads

  #2231 opened 3 years ago by andso17
  1

• I have a big problem help me!!

  #2229 opened 3 years ago by ertanyilmaz38
  0

• I got problem when running qiime2 env

  #2230 opened 4 years ago by VesperLiK
  1

• Support for usearch11 version for parallel_map_reads_to_reference.py

  #2228 opened 5 years ago by jianshu93
  0

• Help with ClustalW..

  #2227 opened 5 years ago by AlliKoehle
  0

• Basespace Google key issue

  #2226 opened 5 years ago by Suchita-Tandon
  1

• If the QIIME2 can analysis the data of Single Molecule Real-Time Sequence

  #2225 opened 5 years ago by MengZhang2019
  0

• incorrect value for phred_offset in qiime

  #2215 opened 6 years ago by hallerliran
  1

• Heatmap does not show differentiation

  #2224 opened 5 years ago by nicey1995
  0

• OTU table including fasta sequences

  #2223 opened 5 years ago by arsilan324
  0

• Alpha Diversity Boxplots

  #2222 opened 6 years ago by Newman-Wang
  0

• Alpha_rarefraction.py error

  #2217 opened 6 years ago by santhoshnh
  1

• Symbols

  #2221 opened 6 years ago by ma680
  0

• unable to install usearch

  #2220 opened 6 years ago by jdhenaos
  0

• info -e

  #2219 opened 6 years ago by megthommes
  0

• Why some of the samples are missing during OTU picking?

  #2218 opened 6 years ago by arsilan324
  1

• biom-format does not pip install on python3.7

  #2216 opened 6 years ago by rwst
  1

• Unable to Generated Google Key for mapping file on BaseSpace App

  #2203 opened 7 years ago by ruchan
  6

• Multiple input file without barcode

  #2214 opened 7 years ago by 341996
  0

• Problems with 454 Overview Tutorial: de novo OTU picking and diversity analyses using 454 data in Qiime 1.9.1 VirtualBox

  #2213 opened 7 years ago by srmacben
  0

• Qiime's requirements result in pip trying to install a broken version of emperor

  #2212 opened 7 years ago by owainkenwayucl
  4

• split_libraries.py -- issue

  #2211 opened 7 years ago by shrutidabral
  0

• Broken links

  #2210 opened 7 years ago by albacrespi
  0

• significant unexpected behavior in `split_sequence_file_on_sample_ids.py`

  #2209 opened 7 years ago by wdwvt1
  1

• Error constructing CommandLineAppResult - assign_taxonomy.py

  #2208 opened 7 years ago by KeironO
  1

• Fix zero length barcode options for extract_barcodes.py

  #2207 opened 7 years ago by walterst
  0

• What's the difference between collapsed modes "mean vs sum"

  #2206 opened 7 years ago by genetalks-fred
  1

• filter_$(otus/samples)_from_otu_table.py do not work, returned error: object dtype dtype('O') has no native HDF5 equivalent

  #2205 opened 7 years ago by apascualgarcia
  4

• Trying to convert txt. file to biom file

  #2204 opened 7 years ago by Acetylcholine88
  1

• Losing too many reads after removing primers and joining

  #2202 opened 7 years ago by Biancabrown
  1

• Qiime Install error : Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-cxxn7r0i/qiime/

  #2201 opened 7 years ago by myshu2017-03-14
  2

• I have Plugin error from demux

  #2200 opened 7 years ago by hulqi
  1

• Cd-hit with QIIME

  #2199 opened 7 years ago by eilenilec
  1

• assign_taxonomy.py error

  #2198 opened 7 years ago by bioinfo17
  0

• Software Licence

  #2197 opened 7 years ago by rockysiu
  1

• beta_significance.py doesn't respect quotes in .tre sample names

  #2195 opened 8 years ago by justin212k
  0

• plot_taxa_summary no html file

  #2192 opened 8 years ago by Ros938
  1

• Doesn't install properly on Ubuntu 16 LTS

  #2191 opened 8 years ago by xapple
  5

• Error when attempting to install qiime on Mac OS X

  #2190 opened 8 years ago by foreignsand
  2

• Make a modernized (i.e., Python > 3.5) QIIME friendly to fungal microbiomes

  #2189 opened 8 years ago by ajpowel
  3

• Modernize QIIME for installation and use with Python 3.5

  #2188 opened 8 years ago by ajpowel
  1

• joining barcodes in dual-index, paired-end sequencing using fastq.join

  #2187 opened 8 years ago by Acetylcholine88
  1

• Pick_otus.py -m swarm doesn't take all of my reads into account

  #2186 opened 8 years ago by anais64
  1

• Qiime User Interface

  #2184 opened 8 years ago by patthehat033
  8

• Memory issues and OTU picking.

  #2185 opened 8 years ago by Biancabrown
  1

• Pypi release syntax error

  #2180 opened 8 years ago by corburn
  1

• remove zero abundance OTUs after filtering samples

  #2183 opened 8 years ago by ConstantinoSchillebeeckx
  1

• computer is 64bit, but qiime virtual box only shows 32bit options

  #2181 opened 8 years ago by fpwilson
  1