foreignsand

Pinned Repositories

blobtoolkit
Interactive quality assessment of genome assemblies
Language:JavaScript83 3 13110
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Language:C++518 28 64585
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
Language:Jupyter Notebook46.6k 306 6595.5k
ccgp_assembly
CCGP Repository for the genome assembly working group.
00
language-r
An Atom language package for R.
Language:CoffeeScript00
pikei
pikei is a python script that will identify the number of diagnostic nucleotides in an alignment window of a specified sequence length
0 1 00
SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data
Language:Python175 21 16547
maptools
CRAN Task View for mapping tools
Language:Makefile43 16 2313
genomescope
Fast genome analysis from unassembled short reads
Language:JavaScript247 20 13356
vgp-assembly
VGP repository for the genome assembly working group
Language:Shell185 26 2351

foreignsand's Repositories

foreignsand/ccgp_assembly
CCGP Repository for the genome assembly working group.
00
foreignsand/language-r
An Atom language package for R.
Language:CoffeeScript00
foreignsand/pikei
pikei is a python script that will identify the number of diagnostic nucleotides in an alignment window of a specified sequence length
0 1 00