foreignsand

Pinned Repositories

blobtoolkit
Interactive quality assessment of genome assemblies
Language:JavaScript90 3 13312
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Language:C++567 30 69789
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
Language:Jupyter Notebook48.5k 313 6825.7k
ccgp_assembly
CCGP Repository for the genome assembly working group.
00
language-r
An Atom language package for R.
Language:CoffeeScript0 1 00
pikei
pikei is a python script that will identify the number of diagnostic nucleotides in an alignment window of a specified sequence length
0 1 00
SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data
Language:Python182 20 16547
medaka
Sequence correction provided by ONT Research
Language:Python431 49 51577
genomescope
Fast genome analysis from unassembled short reads
Language:JavaScript274 20 14557
vgp-assembly
VGP repository for the genome assembly working group
Language:Shell188 26 2351

foreignsand's Repositories

foreignsand/ccgp_assembly
CCGP Repository for the genome assembly working group.
00
foreignsand/language-r
An Atom language package for R.
Language:CoffeeScript0 1 00
foreignsand/pikei
pikei is a python script that will identify the number of diagnostic nucleotides in an alignment window of a specified sequence length
0 1 00