Pinned Repositories
blobtoolkit
Interactive quality assessment of genome assemblies
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
ccgp_assembly
CCGP Repository for the genome assembly working group.
language-r
An Atom language package for R.
pikei
pikei is a python script that will identify the number of diagnostic nucleotides in an alignment window of a specified sequence length
SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data
maptools
CRAN Task View for mapping tools
genomescope
Fast genome analysis from unassembled short reads
vgp-assembly
VGP repository for the genome assembly working group
foreignsand's Repositories
foreignsand/ccgp_assembly
CCGP Repository for the genome assembly working group.
foreignsand/language-r
An Atom language package for R.
foreignsand/pikei
pikei is a python script that will identify the number of diagnostic nucleotides in an alignment window of a specified sequence length