Pinned Repositories
apascualgarcia.github.io
Personal website
consumersresources
Code for the consumers resource project (MS.c. Léo Buchenel)
Contact_Divergence
Software related with the paper: Quantifying the evolutionary divergence of protein structures: the role of function change and function conservation, Pascual-Garcia et al _Proteins_ 2010 78:181-96
cross_over_prot_struct
Supplementary material presented in the manuscript Pascual-Garcia A, Abia D, Ortiz AR, Bastolla U, 2009 Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures. PLoS Comput Biol 5(3): e1000331. doi:10.1371/journal.pcbi.1000331
functionInk
Community detection method for multidimensional networks
maths4biology
Notes and scripts for the course Maths 4 Biology at Imperial College London
NMGS
Neutral model
snake-puzzle
Code to solve and analise "snake" puzzles
SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
Molecular_clock
Software related with the paper "The molecular clock in the evolution of protein structures"
apascualgarcia's Repositories
apascualgarcia/functionInk
Community detection method for multidimensional networks
apascualgarcia/apascualgarcia.github.io
Personal website
apascualgarcia/maths4biology
Notes and scripts for the course Maths 4 Biology at Imperial College London
apascualgarcia/consumersresources
Code for the consumers resource project (MS.c. Léo Buchenel)
apascualgarcia/NMGS
Neutral model
apascualgarcia/SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
apascualgarcia/Contact_Divergence
Software related with the paper: Quantifying the evolutionary divergence of protein structures: the role of function change and function conservation, Pascual-Garcia et al _Proteins_ 2010 78:181-96
apascualgarcia/cross_over_prot_struct
Supplementary material presented in the manuscript Pascual-Garcia A, Abia D, Ortiz AR, Bastolla U, 2009 Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures. PLoS Comput Biol 5(3): e1000331. doi:10.1371/journal.pcbi.1000331
apascualgarcia/snake-puzzle
Code to solve and analise "snake" puzzles
apascualgarcia/BRC1NET
A web based app developed using the R package shiny to explore the transcriptional network downstream from the Arabidopsis thaliana transcriptional factor BRC1.
apascualgarcia/gplots
:exclamation: This is a read-only mirror of the CRAN R package repository. gplots — Various R Programming Tools for Plotting Data
apascualgarcia/Invasion
Scripts to compute SEM for invasion experiments in natural microbial communities
apascualgarcia/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
apascualgarcia/RatioDependent
Fortran integration of ratio-dependent population dynamic models
apascualgarcia/ReplayEcology
This repository contains scripts and data to reproduce results of the article Replaying the tape of ecology to domesticate wild microbiota
apascualgarcia/structural_stability_prediction
code to compute the critical perturbation on the growth rates that a Lotka-Volterra mutualistic system can afford, as described in Pascual-Garcia & Bastolla Nat Comm 2017
apascualgarcia/TreeHoles_descriptive