althonos/pronto

Issues

• How to delete terms in ontology?

  #137 opened 4 years ago
  2

• Pronto 2.4.1 and dependency chardet 4.0.0

  #136 opened 4 years ago
  1

• UnicodeWarning: unsound encoding with hp.obo

  #133 opened 4 years ago
  4

• .obo SyntaxErorrs

  #131 opened 4 years ago
  3

• Syntax error in latest version of psi-mi.obo

  #129 opened 4 years ago
  2

• [CRITICAL] Terms marked incorrectly as obsolete

  #126 opened 4 years ago
  3

• Error parsing cl.obo (from the readme)

  #123 opened 4 years ago
  3

• Term incorrectly marked as obsolete when reading go-basic.json

  #122 opened 4 years ago
  4

• Finding alternate HPO Term

  #120 opened 4 years ago
  3

• What relationships are used to create subclasses/superclasses?

  #119 opened 4 years ago
  6

• Term property for URI?

  #117 opened 4 years ago
  3

• Document handling of obsolete and replaced terms

  #116 opened 4 years ago
  5

• _extract_term fails when an ObjectProperty with the same IRI exists

  #111 opened 4 years ago
  6

• Memory assignment error in EncodedFile.readinto

  #109 opened 4 years ago
  5

• Get one definition when there's multiple definitions

  #104 opened 4 years ago
  5

• Dependabot couldn't authenticate with https://pypi.python.org/simple/

  #103 opened 4 years ago
  0

• How to create a synontypedef and add synonyms

  #102 opened 4 years ago
  4

• Cannot parse Experimental Factor Ontology (EFO) in either OBO or OWL format

  #101 opened 4 years ago
  3

• Extract main Term using alt_id

  #100 opened 4 years ago
  6

• Synonymtypedef format error

  #97 opened 4 years ago
  2

• OBO comments in relationships

  #96 opened 4 years ago
  1

• Synonym modelling and trailing modifiers

  #95 opened 4 years ago
  1

• Could not find a parser to parse

  #92 opened 4 years ago
  1

• Handle relationships to terms in other ontologies that are not imported

  #89 opened 4 years ago
  4

• Differences when parsing OBO and OWL files from OboFoundry

  #88 opened 5 years ago
  3

• Adding a relationship between two terms

  #84 opened 5 years ago
  5

• What to use instead of `rchildren` and `rparents`?

  #81 opened 5 years ago
  3

• Uberon OBO Parse Error

  #80 opened 5 years ago
  3

• Python 3.8 on MacOS

  #74 opened 5 years ago
  3

• Error when adding a synonym type to a synonym

  #71 opened 5 years ago
  2

• How to create Synonyms with XREFs

  #70 opened 5 years ago
  2

• 'str' object has no attribute 'synonyms' Error

  #69 opened 5 years ago
  2

• ValueError: could not find `owl:Ontology` element

  #68 opened 5 years ago
  2

• Uberon OWL parse error

  #67 opened 5 years ago
  1

• Make Ontologies object serializable

  #66 opened 5 years ago
  5

• error parsing EFO obo file

  #65 opened 5 years ago
  11

• defunct gene ontology items

  #64 opened 5 years ago
  9

• Option to cache ontologies

  #62 opened 5 years ago
  1

• Strange NoneType errors with Terms when not accessed directly from an Ontology object

  #60 opened 5 years ago
  5

• Source code on github does not correspond to the one in pypi

  #58 opened 5 years ago
  4

• Ignore errors per term when parsing

  #57 opened 5 years ago
  1

• Issues with the new Pronto API

  #55 opened 5 years ago
  11

• Ignore Windows line breaks (\r) in .obo and imported ontologies files

  #53 opened 5 years ago
  4

• Support for OBO comments

  #52 opened 5 years ago
  2

• Term.replaced_by raises KeyError

  #44 opened 5 years ago
  3

• [Possible non-issue] SyntaxError: expected QuotedString

  #43 opened 5 years ago
  3

• TypeError: sequence item 0: expected str instance, NoneType found

  #42 opened 5 years ago
  5

• recommended way to fetch #shorthand

  #41 opened 5 years ago
  3

• Grabbing comments from Terms

  #40 opened 5 years ago
  1

• /pronto/serializers is not included when pip install

  #39 opened 5 years ago
  1