obophenotype/upheno

Issues

• Make the correct mappings more visible

  #962 opened 4 months ago by cmungall
  0

• shape tail in upheno file

  #961 opened 4 months ago by sbello
  0

• upheno v2 link broken on OBO page of upheno

  #960 opened 4 months ago by hoganwr
  2

• Documentation: Many stub markdown articles with little or no content

  #954 opened 6 months ago by DnlRKorn
  1

• 'Vulvar hemangioma' logical definition problem

  #958 opened 2 years ago by balhoff
  11

• Change EQ for Increased/decreased adipose tissue

  #959 opened a year ago by LCCarmody
  3

• Documentation: Figure numbering inconsistent in docs/reference/data-integration.md

  #952 opened 6 months ago by DnlRKorn
  2

• Ensure that all TOP level HPO and MP terms have corresponding uPheno classes

  #948 opened 7 months ago by matentzn
  10

• Investigate why "uPheno:circulatory system phenotype" and "uPheno: integumental system phenotype" do not exist..

  #947 opened 7 months ago by matentzn
  2

• Consider creating all Uberon system level phenotype classes manually for uPheno

  #949 opened 7 months ago by matentzn
  0

• CHEBI IDs used by HPO and other phenotype ontologies do not match those used by GO, RHEA, UniProt

  #946 opened 7 months ago by cmungall
  2

• Some plural labels do not work

  #943 opened 8 months ago by matentzn
  1

• Documentation: Dead link to OLS

  #942 opened 9 months ago by hansenp
  1

• Dealing with GO obsoletion cell death

  #912 opened 2 years ago by sbello
  0

• RPPR stats OBA

  #935 opened 9 months ago by matentzn
  0

• Add page documenting stakeholder meetings to documentation

  #930 opened 9 months ago by matentzn
  0

• Map APO entities to OBA / GO (or whatever else)

  #928 opened a year ago by matentzn
  5

• Create a uPheno release product for data analysis

  #932 opened 10 months ago by matentzn
  2

• Map APO modifiers to PATO

  #927 opened a year ago by matentzn
  10

• Request new pattern for Incomplete structure

  #931 opened 10 months ago by LCCarmody
  4

• Failure importing http://purl.obolibrary.org/obo/upheno/upheno_root_alignments.owl

  #929 opened a year ago by haideriqbal
  4

• test cases to compare characteristic of vs characterisitc of part of

  #925 opened a year ago by sbello
  2

• new pattern: abnormallyAbsenceRateOfBiologicalProcess

  #924 opened a year ago by pfey03
  1

• new pattern

  #923 opened a year ago by pfey03
  0

• MP-HPO phenotype alignment: check if axiom matches agree with text definitions

  #921 opened a year ago by rays22
  6

• Use case discussion for paper / + outreach group

  #922 opened a year ago by matentzn
  0

• upheno.owl cannot be parsed with Pronto

  #919 opened 2 years ago by Zethson
  4

• Abnormal constriction of anatomical entity pattern template

  #913 opened a year ago by ar-ibrahim
  0

• Versionized download links

  #918 opened 2 years ago by Zethson
  1

• Documentation request: "Normal" phenotypes

  #916 opened 2 years ago by matentzn
  0

• Documentation request: comparators in phenotype definitions

  #917 opened 2 years ago by matentzn
  0

• We documented the editors’ workflows for maintaining phenotype patterns and harmonizing

  #910 opened 2 years ago by matentzn
  0

• Create a basic Upheno toolkit for bioinformaticians

  #909 opened 2 years ago by matentzn
  0

• create a pattern for biological attribute severity

  #906 opened 2 years ago by Daniel-Olson
  2

• create a pattern for adding anatomy subclass axioms

  #904 opened 2 years ago by sbello
  1

• update the pattern matches

  #902 opened 2 years ago by sbello
  1

• Investigate cases where the uPheno2 semantic similarity score is lower than the uPheno1 score

  #900 opened 2 years ago by rays22
  1

• Create a proper APO integration

  #903 opened 2 years ago by matentzn
  0

• Abnormally arched anatomical entity pattern template

  #893 opened 2 years ago by rays22
  0

• Help match HPO and MP EQs

  #898 opened 2 years ago by rays22
  2

• Request a term for `voluntary control of defecation`

  #899 opened 2 years ago by rays22
  0

• Initiate pattern review process with HPO

  #883 opened 2 years ago by matentzn
  2

• version information is missing

  #897 opened 2 years ago by psiotwo
  0

• Abnormally scaly anatomical entity pattern template

  #894 opened 2 years ago by rays22
  0

• Add herniated anatomical entity pattern template

  #889 opened 2 years ago by rays22
  1

• Add abnormally dilated cellular component pattern template

  #891 opened 2 years ago by rays22
  0

• Abnormally greasy anatomical entity pattern template

  #880 opened 2 years ago by rays22
  0

• Abnormally glistening anatomical entity pattern template

  #884 opened 2 years ago by rays22
  0

• New patterns for rate of continuous process

  #886 opened 2 years ago by Clare72
  0

• Update cystInLocation logical definition

  #878 opened 2 years ago by rays22
  1