Hydra Skeleton (Cohort Diagnostics) Not harmonised with current release arguments
DrTTrousers opened this issue · 0 comments
DrTTrousers commented
The skeleton built upon by Hydra when creating a diagnostics package has arguments that have been removed from the recent cohort diagnostics package:
Including (not fully exhaustive) commented out lines below which cause errors when executing the final package
cohortIds = NULL,
#inclusionStatisticsFolder = outputFolder,
databaseName = databaseName,
databaseDescription = databaseDescription,
cdmVersion = 5,
runInclusionStatistics = TRUE,
runIncludedSourceConcepts = TRUE,
runOrphanConcepts = TRUE,
#runTimeDistributions = TRUE,
runVisitContext = TRUE,
runBreakdownIndexEvents = TRUE,
runIncidenceRate = TRUE,
runTimeSeries = FALSE,
#runCohortOverlap = TRUE,
#runCohortCharacterization = TRUE,
#covariateSettings = FeatureExtraction::createDefaultCovariateSettings(),
runTemporalCohortCharacterization = TRUE,
Is there an action ready to update these skeletons?