OHDSI/Hydra

Hydra Skeleton (Cohort Diagnostics) Not harmonised with current release arguments

DrTTrousers opened this issue · 0 comments

The skeleton built upon by Hydra when creating a diagnostics package has arguments that have been removed from the recent cohort diagnostics package:

Including (not fully exhaustive) commented out lines below which cause errors when executing the final package

cohortIds = NULL,
    #inclusionStatisticsFolder = outputFolder,
    databaseName = databaseName,
    databaseDescription = databaseDescription,
    cdmVersion = 5,
    runInclusionStatistics = TRUE,
    runIncludedSourceConcepts = TRUE,
    runOrphanConcepts = TRUE,
    #runTimeDistributions = TRUE,
    runVisitContext = TRUE,
    runBreakdownIndexEvents = TRUE,
    runIncidenceRate = TRUE,
    runTimeSeries = FALSE,
    #runCohortOverlap = TRUE,
    #runCohortCharacterization = TRUE,
    #covariateSettings = FeatureExtraction::createDefaultCovariateSettings(),
    runTemporalCohortCharacterization = TRUE,

Is there an action ready to update these skeletons?