Pinned Repositories
Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
CohortMethod
An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
Cyclops
Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
DataQualityDashboard
A tool to help improve data quality standards in observational data science.
PatientLevelPrediction
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
Vocabulary-v5.0
Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
WebAPI
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
WhiteRabbit
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
Observational Health Data Sciences and Informatics's Repositories
OHDSI/Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
OHDSI/Vocabulary-v5.0
Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
OHDSI/PatientLevelPrediction
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
OHDSI/WebAPI
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
OHDSI/Cyclops
Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
OHDSI/Themis
Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data generation or quality certification, and debates.
OHDSI/dbt-synthea
[Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
OHDSI/ETL-LambdaBuilder
CDM Builder leveraging AWS Lambda
OHDSI/SelfControlledCaseSeries
An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
OHDSI/Ares
A Research Exploration System
OHDSI/CohortGenerator
Cohort Generation for the OMOP Common Data Model
OHDSI/Andromeda
AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.
OHDSI/EvidenceSynthesis
An R package for combining evidence from multiple sources (e.g. multiple data sites)
OHDSI/SelfControlledCohort
An R package for performing self-controlled cohort analyses, a method to estimate risk by comparing time exposed with time unexposed among the exposed cohort.
OHDSI/MethodEvaluation
An R package for the evaluation of estimation methods
OHDSI/Strategus
[Under development] An R packages for coordinating and executing analytics using HADES modules
OHDSI/Broadsea-Atlasdb
A Postgresql database in a Docker container for OHDSI Atlas/WebAPI
OHDSI/Broadsea-Dbt
A Docker container for the open source Data Build Tool
OHDSI/gaiaCore
An R Package for interacting with gaiaDB - part of the OHDSI GIS Gaia toolchain
OHDSI/OmopSketch
OHDSI/OmopViewer
OHDSI/Ulysses
Ulysses is an R package that automates setup of an OHDSI study and provides functions to assist with its maintenance and organization.
OHDSI/Arachne
Arachne Data Node web application
OHDSI/ClinicalTrialsWG-TB
Clinical Trials Work Group ETL for Tuberculosis studies
OHDSI/CohortConstructor
OHDSI/CohortSymmetry
OHDSI/LocalControl
An R Package for Generating High Quality Comparative Effectiveness Evidence
OHDSI/PhenotypeR
OHDSI/ConceptSetDiagnostics
Package to assist with design diagnostics for concept set
OHDSI/TxPathways
[under development] OHDSI tool to build treatment history of population and derive summary statistics of patterns of treatment