Pinned Repositories
1st-place-solution-single-cell-pbs
This repository implements the winning solution for the single cell perturbation problems
2024-AI4S-Cup-LLM-Challenge
2024AI4S Cup - LLM挑战赛 - 大模型提取“基因-疾病-药物”知识图谱 rank7方案
AI4SCup-LLM-Rank4
AI4S Cup -LLM挑战赛-大模型提取“基因-疾病-药物”知识图谱-解决方案-Rank4
ALLCools
Toolkit for single-cell DNA methylation analysis.
annotated_deep_learning_paper_implementations
🧑🏫 59 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
AttentionPert
awesome-agents-biology-papers
awesome-deep-learning-single-cell-papers
SpatialGlue
SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
SpatialGlue-1
SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
ONERAI's Repositories
ONERAI/AI4SCup-LLM-Rank4
AI4S Cup -LLM挑战赛-大模型提取“基因-疾病-药物”知识图谱-解决方案-Rank4
ONERAI/awesome-agents-biology-papers
ONERAI/awesome-deep-learning-single-cell-papers
ONERAI/CellFM
ONERAI/foundation-model-single-cell-papers
ONERAI/funcfetch
FuncFetch workflow scripts
ONERAI/gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
ONERAI/llama3-from-scratch
llama3 implementation one matrix multiplication at a time
ONERAI/llm-action
本项目旨在分享大模型相关技术原理以及实战经验。
ONERAI/llm-course
Course to get into Large Language Models (LLMs) with roadmaps and Colab notebooks.
ONERAI/LLM-from-scratch
ONERAI/LLM101n
LLM101n: Let's build a Storyteller
ONERAI/LLMs-from-scratch
Implementing a ChatGPT-like LLM in PyTorch from scratch, step by step
ONERAI/LucaOne
The LucaOne’s model code.
ONERAI/multiomics-open-research
BulkRNABert: Cancer prognosis from bulk RNA-seq based language models
ONERAI/nanoGPT
The simplest, fastest repository for training/finetuning medium-sized GPTs.
ONERAI/nicheformer
Repository for Nicheformer: a foundation model for single-cell and spatial omics
ONERAI/pertpy
Perturbation Analysis in the scverse ecosystem.
ONERAI/PINNACLE
Contextualizing protein representations using deep learning on protein networks and single-cell data
ONERAI/scFoundation
ONERAI/scGPT
ONERAI/scPRINT
Single Cell Pretrained Regulatory network INference from Transcripts
ONERAI/scTranslator
ONERAI/single-cell-transformer-papers
ONERAI/spatial-lung-fibrosis
Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcriptomics data presented in our associated manuscript.
ONERAI/STAMapper
ONERAI/SwissArmyTransformer
SwissArmyTransformer is a flexible and powerful library to develop your own Transformer variants.
ONERAI/TransformerST
A Transformer Model Exploiting Histology Images and Spatial Gene Expression
ONERAI/UNI
Towards a general-purpose foundation model for computational pathology - Nature Medicine
ONERAI/xTrimoPGLM