Oxford Particle Imaging Centre

emed

For masking out areas outside the holes on the EM grids, written in MATLAB

localrec

Localized reconstruction of flexible subunits from cryo-EM images

PatchFinder

This script extracts regular patches of particles from a Dynamo table of particles.

pyrelion-scripts

Scripts for Relion written in Python and using pyrelion class to parse STAR files

relion-relax

scipion

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

TomoPreprocess

This set of scripts performs common preprocessing functions for tomographic tilt series data before further processing (eg with etomo)

OPIC-Oxford/localrec

Localized reconstruction of flexible subunits from cryo-EM images

OPIC-Oxford/pyrelion-scripts

Scripts for Relion written in Python and using pyrelion class to parse STAR files

OPIC-Oxford/emed

For masking out areas outside the holes on the EM grids, written in MATLAB

OPIC-Oxford/relion-relax

OPIC-Oxford/TomoPreprocess

This set of scripts performs common preprocessing functions for tomographic tilt series data before further processing (eg with etomo)

OPIC-Oxford/PatchFinder

This script extracts regular patches of particles from a Dynamo table of particles.

OPIC-Oxford/scipion

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)