OSU-SRLab/MANTIS

Support GATK .bai naming

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knightjimr commented

For a BAM file named "file.bam", the GATK pipeline typically generates an index file named "file.bai" (instead of "file.bam.bai"). Could the tool be updated to support that naming convention as well?

lozybean commented

plz check this PR to fix this issue: #51

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