Issues
- 5
Failed to fetch sequence; Error with k-mer repeat count calculations; terminating program.
#54 opened by JessicaRoelands - 0
Use the FASTA index to get chromosome ordering
#64 opened by nh13 - 3
Package MANTIS
#20 opened by messersc - 5
- 1
Error with k-mer repeat count calculations; terminating program, which seems to be triggered by "_multiprocessing.SemLock Permission Denied"
#60 opened by HuangRuocheng - 1
typo in module checking
#59 opened by frederic-michaud - 8
- 0
Running Mantis on WGS Sample
#58 opened by ghosholivia - 8
can't finish the process
#57 opened by RiMaxim - 2
- 1
Support GATK .bai naming
#33 opened by knightjimr - 1
About MS loci BED file used in MANTIS
#55 opened by Clouate - 2
interpreter mismatch
#52 opened by lozybean - 0
In README: make RepeatFinder
#48 opened by nanakiksc - 0
MANTIS output fails if path to output contains a dot and output file stem does not
#39 opened by rbonneville - 4
Issue in
#45 opened by YuvaraniThambidurai - 1
Issue in runni
#47 opened by YuvaraniThambidurai - 9
- 1
Issue
#46 opened by YuvaraniThambidurai - 11
Microsatellite Loci BED File
#40 opened by gpuwarrior - 0
- 2
- 12
Issue running MANTIS
#42 opened by chloe35430 - 3
MANTIS on Mouse samples
#38 opened by Rashesh7 - 1
Repeatfinder missing?
#41 opened by danchubb - 1
score range
#35 opened by twelvesummer - 2
installing MANTIS
#37 opened by gpuwarrior - 1
- 5
MANTIS on WGS samples
#25 opened by Rashesh7 - 2
- 5
Output Files - status and *.txt
#29 opened by danablanc - 0
- 0
Please put citation info into the README
#30 opened by messersc - 5
RAM usage on targeted reads
#24 opened by IvantheDugtrio - 2
Add the support of TUMOR-only sample
#27 opened by wangyugui - 1
output files
#26 opened by fangylo - 1
RepeatFinder: recommended minimum k-mer length
#23 opened by messersc - 0
- 1
- 2
Missing RepeatFinder tool
#14 opened by gunjanhariani - 1
- 4
k-mer repeat count Error
#10 opened by patidarr - 0
Limit coordinate range for requests
#8 opened by kautto - 0
Handle missing chromosomes
#7 opened by kautto - 0
Add support for hardclipped reads
#6 opened by kautto - 0
Handle 0/1-base length reads
#5 opened by kautto - 0
Add in status output
#3 opened by kautto - 0
Default thread count
#1 opened by kautto - 0
Check for Pysam availability
#2 opened by kautto