Pinned Repositories
autoparadvisor
gota
Gota: DataFrames and data wrangling in Go (Golang)
mantis
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
mudskipper
A tool for projecting genomic alignments to transcriptomic coordinates
RENT
Feature selection method based on repeated elastic net.
sad
salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
scallop
Scallop is a reference-based transcriptome assembler for RNA-seq
squid
SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
txomeai
R wrapper for the txome.ai RNA-Seq analysis API
Ocean Genomics, Inc.'s Repositories
OceanGenomics/mudskipper
A tool for projecting genomic alignments to transcriptomic coordinates
OceanGenomics/autoparadvisor
OceanGenomics/gota
Gota: DataFrames and data wrangling in Go (Golang)
OceanGenomics/mantis
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
OceanGenomics/RENT
Feature selection method based on repeated elastic net.
OceanGenomics/txomeai
R wrapper for the txome.ai RNA-Seq analysis API
OceanGenomics/sad
OceanGenomics/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
OceanGenomics/scallop
Scallop is a reference-based transcriptome assembler for RNA-seq
OceanGenomics/squid
SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
OceanGenomics/arriba
Fast and accurate gene fusion detection from RNA-Seq data
OceanGenomics/diploidsquid
Diploid-SQUID detects transcriptomic structural variations in heterogeneous contexts.
OceanGenomics/goofys
a high-performance, POSIX-ish Amazon S3 file system written in Go
OceanGenomics/hts
biogo high throughput sequencing repository
OceanGenomics/pufferfish
An efficient index for the colored, compacted, de Bruijn graph
OceanGenomics/rnaseqtools
toolkit to process gtf files