Pinned Repositories
AMON
Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data
atlas
ATLAS - Three commands to start analysing your metagenome data
bioconda-recipes
Conda recipes for the bioconda channel.
cloud-genomics
DataCodes_iOmicsPASS
GEM
Build your own GEM model
hydra
Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)
omics
Codes of the statistical analyses using for "an aberrant intestinal microbiota aggravates renal failure in human and rodents".
worldmap-panel
Worldmap panel plugin for Grafana 3.0 that can be overlaid with circles for data points.
OlafTyc's Repositories
OlafTyc/atlas
ATLAS - Three commands to start analysing your metagenome data
OlafTyc/hydra
Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)
OlafTyc/omics
Codes of the statistical analyses using for "an aberrant intestinal microbiota aggravates renal failure in human and rodents".
OlafTyc/worldmap-panel
Worldmap panel plugin for Grafana 3.0 that can be overlaid with circles for data points.
OlafTyc/AMON
Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data
OlafTyc/bioconda-recipes
Conda recipes for the bioconda channel.
OlafTyc/cloud-genomics
OlafTyc/DataCodes_iOmicsPASS
OlafTyc/GEM
Build your own GEM model
OlafTyc/h5py
HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.
OlafTyc/kraken2
The second version of the Kraken taxonomic sequence classification system
OlafTyc/microbiomeQTL
A pipeline for microbiome analysis
OlafTyc/mzmine2
MZmine 2 source code repository
OlafTyc/picrust2
Code, unit tests, and tutorials for running PICRUSt2
OlafTyc/picrust_galaxy
Create a galaxy instance of PICRUSt.
OlafTyc/QC-NGS
This tutorial will guide you through the process of generating and reading a QC report.
OlafTyc/training-material
A collection of Galaxy-related training material
OlafTyc/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly