OllyK
Protein chemical biology, 3D volume segmentation, image classification, object detection. Working in the OxRSE group
Oxford, UK
Pinned Repositories
gas-hydrate-segmentation-unets
Code for segmentation of 3-dimensional X-ray Computed Tomography (XCT) images of methane bearing sand using 2d and 3d U-net models
placental-segmentation-2dunet
Jupyter notebooks for training of a 2d Unet on placental tissue followed by segmentation of a 3d block of image data through combination of 2d segmentation outputs
SuRVoS
(Su)per (R)egion (Vo)lume (S)egmentaton workbench
SuRVoS2
Next generation of SuRVoS
volume-segmantics
A toolkit for semantic segmentation of volumetric data using PyTorch deep learning models
2015
Public material for CS109
akane-website
AutoZebrafish
Tools for automated, high-throughput behavioural tests for zebrafish. Our automated system streamlines experiments for visual and spatial cognition tests.
Cata2Data
Produce a loadable data set from a catalogue.
chimp-tools
Code to create and use the CHiMP (Crystal Hits in My Plate) classification and object detection networks
OllyK's Repositories
OllyK/chimp-tools
Code to create and use the CHiMP (Crystal Hits in My Plate) classification and object detection networks
OllyK/2015
Public material for CS109
OllyK/akane-website
OllyK/AutoZebrafish
Tools for automated, high-throughput behavioural tests for zebrafish. Our automated system streamlines experiments for visual and spatial cognition tests.
OllyK/Cata2Data
Produce a loadable data set from a catalogue.
OllyK/course-material
OllyK/docker-actions
Repo to test building of containers with Github Actions
OllyK/fastai-v3
Starter app for fastai v3 model deployment on Render
OllyK/rse-jobscraper
A python program to scrape some websites for research software engineering-type jobs and send an email
OllyK/ci_course
Cloned OxRSE CI course repo
OllyK/Deep_learning_ms_optimization
Deep Learning for metasurface parameter optimization using tensorflow/keras
OllyK/kwizzical
OllyK/nene_website
Source code for my Website to be built with nene
OllyK/ollyk.github.io
Website Repo
OllyK/pollution-data-navigator
ReactJS App to show some pollution data from the Open AQ Platform API An API for open air quality data.
OllyK/SoundBytes
OllyK/test-fair-software
Test software for assessing FAIR principles
OllyK/Testing
A test repo for a ton of things
OllyK/TeXRank
Algorithm for ranking crystallization droplets
OllyK/volume-segmantics
A toolkit for semantic segmentation of volumetric data using PyTorch deep learning models