OluwadareLab
This Research Group focuses on developing efficient algorithms and computational methods to solve biological problems.
University of Colorado, Colorado Springs Colorado Springs, Colorado
Pinned Repositories
CBCR
CBCR: A Curriculum Based Strategy For Chromosome Reconstruction
CNNSplice
CNNSplice: Robust Models for Splice Site Prediction Using Deep Convolutional Neural Networks
Comprehensive_Loop-Caller_Benchmark
DeepSplicer
DeepSplicer
EnsembleSplice
Ensemble Deep Learning for Splice Site Prediction
HiC-GNN
A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks
HiCARN
HiCARN: Resolution Enhancement of Hi-C Data Using Cascading Residual Networks
ParticleChromo3D
Using Particle Swarm Algorithm for chromosome three-dimensional structure construction
ParticleChromo3D_Plus
A Web-Server implementation of ParticleChromo3D for 3D chromosome structure reconstruction
TADMaster
TADMaster: A Comprehensive Web-based Tool For Analysis of Topologically Associated Domains
OluwadareLab's Repositories
OluwadareLab/HiC-GNN
A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks
OluwadareLab/HiCARN
HiCARN: Resolution Enhancement of Hi-C Data Using Cascading Residual Networks
OluwadareLab/ParticleChromo3D
Using Particle Swarm Algorithm for chromosome three-dimensional structure construction
OluwadareLab/ParticleChromo3D_Plus
A Web-Server implementation of ParticleChromo3D for 3D chromosome structure reconstruction
OluwadareLab/Comprehensive_Loop-Caller_Benchmark
OluwadareLab/DeepSplicer
DeepSplicer
OluwadareLab/EnsembleSplice
Ensemble Deep Learning for Splice Site Prediction
OluwadareLab/TADMaster
TADMaster: A Comprehensive Web-based Tool For Analysis of Topologically Associated Domains
OluwadareLab/CBCR
CBCR: A Curriculum Based Strategy For Chromosome Reconstruction
OluwadareLab/CNNSplice
CNNSplice: Robust Models for Splice Site Prediction Using Deep Convolutional Neural Networks
OluwadareLab/Robin
Robin: A Comparative Tool for Loop Callers Analysis Leveraging Large Language Models
OluwadareLab/3DMax
A maximum likelihood method for reconstructing 3D chromosome structure from chromosomal contact data
OluwadareLab/ASPECT
ASPECT: Alternative SPlicing Events Classification with Transformer
OluwadareLab/ChromeBat
ChromeBat: A Bio-Inspired Approach to 3D Genome Reconstruction
OluwadareLab/Fungi_3DGenome
OluwadareLab/CNNSpliceWebserver
Webserver for the CNNSplice Project
OluwadareLab/EmbedTAD
OluwadareLab/HiCForecast
HiCForecast: Dynamic Network Optical Flow Estimation Algorithm for Spatiotemporal Hi-C Data Forecasting
OluwadareLab/RECSplice
RECSplice: Splice Site Prediction Using Recurrent Neural Networks
OluwadareLab/Robin_documentation
OluwadareLab/ScanChIP-P
OluwadareLab/ScHicAtt
ScHicAtt: Single Cell Hi-C Super Resolution Enhancement Using Attention Methods
OluwadareLab/SimSCP
SimCSP: A Simple Contrastive Learning Model for Splice Site Prediction