OpenBioSim/biosimspace_tutorials

Issues

• getting error while generating restrains for ABFE

  #28 opened 2 months ago by jjmallen
  6

• Question about equilibration protocol

  #29 opened 2 months ago by jasmin-guven
  6

• Tutorial 4: 01_setup_rbfe - update required for amber support

  #8 opened 2 years ago by jmichel80
  7

• Parametrizing Protein with TPO Residue

  #26 opened 4 months ago by amarye
  5

• Not picking gpu

  #24 opened 4 months ago by mayank-kohli
  9

• [BUG] [ABFE] ignore_warning=True NOT WORK for lam_vals

  #23 opened a year ago by ErikZhang-9762
  1

• Funnel metadynamics error

  #22 opened a year ago by amarye
  3

• Tutorial 1: 01_introduction/05_running_nodes.ipynb runtime error

  #18 opened a year ago by jmichel80
  2

• 01_setup_abfe notebook crashes on try.openbiosim.org

  #11 opened a year ago by akalpokas
  8

• Error in protein parameterization

  #20 opened a year ago by mayank-kohli
  5

• ABFE using openmm

  #19 opened a year ago by mayank-kohli
  1

• Tutorial 1: 01_introduction/03_molecular_dynamics.ipynb broken with 2023.4

  #17 opened a year ago by jmichel80
  7

• alchemical_introduction tutorial is broken on try.openbiosim.org

  #5 opened a year ago by jmichel80
  44

• pdb4amber link in notebook 02 of the introduction is not working

  #6 opened a year ago by ppxasjsm
  3

• Fail when running mamba install instructions

  #7 opened a year ago by ppxasjsm
  2

• Type Error

  #15 opened a year ago by mayank-kohli
  2

• Tutorial 04: 02_RBFE

  #13 opened a year ago by mayank-kohli
  2

• Broken links in TOCs of the notebooks

  #1 opened a year ago by jmichel80
  2