OptogeneticsandNeuralEngineeringCore
Optogenetics and Neural Engineering (ONE) Core at the University of Colorado Denver, School of Medicine. bit.ly/onecore
University of Colorado Denver
Pinned Repositories
Arduino-TTL-Pulse-Generator-and-Controller
Design and Control your experiments with a TTL Generator and Controller
bs
CLARA_DLC
Adaptation of deeplabcut for video acquisition and analysis using the BioElectrics Lab CLARA (closed-loop automated reaching apparatus)
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
DeepLabCut-live
SDK for running DeepLabCut on a live video stream
MiniScope
Sharing some designs for the Amazing MiniScope project
MoveToGitlab
We have moved all new git use to gitlab. You can poke around here, poke around there, but the real site it over at bit.ly/onecore
StereotaxicNeuroprobeamajiger
Inexpensive 3D printed parts to easily attach to basic stereotaxic equipment. Several designs are shared and can hold MiniScope microscopes, fiber optic cannulas, neural electric array probes, *or both optics and electrodes*. Also can secure wires and fibers out of the way.
OptogeneticsandNeuralEngineeringCore's Repositories
OptogeneticsandNeuralEngineeringCore/Arduino-TTL-Pulse-Generator-and-Controller
Design and Control your experiments with a TTL Generator and Controller
OptogeneticsandNeuralEngineeringCore/StereotaxicNeuroprobeamajiger
Inexpensive 3D printed parts to easily attach to basic stereotaxic equipment. Several designs are shared and can hold MiniScope microscopes, fiber optic cannulas, neural electric array probes, *or both optics and electrodes*. Also can secure wires and fibers out of the way.
OptogeneticsandNeuralEngineeringCore/MiniScope
Sharing some designs for the Amazing MiniScope project
OptogeneticsandNeuralEngineeringCore/bs
OptogeneticsandNeuralEngineeringCore/CLARA_DLC
Adaptation of deeplabcut for video acquisition and analysis using the BioElectrics Lab CLARA (closed-loop automated reaching apparatus)
OptogeneticsandNeuralEngineeringCore/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
OptogeneticsandNeuralEngineeringCore/DeepLabCut-live
SDK for running DeepLabCut on a live video stream
OptogeneticsandNeuralEngineeringCore/DeepLabCut-live-GUI
GUI to run DeepLabCut on live video feed
OptogeneticsandNeuralEngineeringCore/dynamic_clamp
A fast, microcontroller-based dynamic clamp system
OptogeneticsandNeuralEngineeringCore/MoveToGitlab
We have moved all new git use to gitlab. You can poke around here, poke around there, but the real site it over at bit.ly/onecore
OptogeneticsandNeuralEngineeringCore/DynamicClamp
Expansion of the "A Dynamic Clamp on Every Rig" by Niraj S. Desai
OptogeneticsandNeuralEngineeringCore/ETC-CLARITY-Chamber
An inexpensive, simple, and robust tissue clearing chamber for use with CLARITY.
OptogeneticsandNeuralEngineeringCore/Frame2TTL
Hardware and software to capture discrete pixel intensity transitions from an LCD screen
OptogeneticsandNeuralEngineeringCore/free-programming-books
:books: Freely available programming books
OptogeneticsandNeuralEngineeringCore/GCP-VM-Images
GCP VM Images
OptogeneticsandNeuralEngineeringCore/gui-docs
Documentation for the Open Ephys GUI
OptogeneticsandNeuralEngineeringCore/LabVIEW_LJM
This is the public repository for LabVIEW code to use the LabJack LJM library.
OptogeneticsandNeuralEngineeringCore/LesionMaker
An Arduino based controller to safely create tissue lesions across electrodes
OptogeneticsandNeuralEngineeringCore/MicroscopeCamera
OptogeneticsandNeuralEngineeringCore/MicroscopeLED
OptogeneticsandNeuralEngineeringCore/ONECoreSite
OptogeneticsandNeuralEngineeringCore/open-ephys-pcie
Hardware, firmware, and host APIs for serialized, high channel count, closed-loop electrophysiology :rat:
OptogeneticsandNeuralEngineeringCore/Outreach
OptogeneticsandNeuralEngineeringCore/Pi-Camera-Web-Interface-with-Microscope
Raspberry Pi Camera Web Interface with Microscope
OptogeneticsandNeuralEngineeringCore/razer-blade-data-science
Setting up Ubuntu on the Razer Blade 15 (2021)
OptogeneticsandNeuralEngineeringCore/SmallProjectFiles
OptogeneticsandNeuralEngineeringCore/snakesnap
Flask application to control a thermal camera. Built for a UC Denver neuroscience outreach event
OptogeneticsandNeuralEngineeringCore/Tetroplater
An open-source circuit for microwire tetrode gold plating
OptogeneticsandNeuralEngineeringCore/video-capture-async
Multithreaded video capture with OpenCV and Python