Pinned Repositories
Bioinformatics-web-app
A bioinformatics web app built using streamlit and biopython
Calculator
A simple calculator GUI with tkinter
DataWorkshop
Docker_static_build
fastapi
Prototype social media backend built with FastAPI & Postgresql
multi-reform
A command-line script for editing genome files.
Powerpoint_automation
RShiny-tutorial-Single-cell-genomics-dashboard
A web app to view and analyze single cell RNAseq data with Seurat
SCGA
A Nextflow pipeline for the analysis of single cell genomics data
Tutorials
OscarW99's Repositories
OscarW99/Powerpoint_automation
OscarW99/RShiny-tutorial-Single-cell-genomics-dashboard
A web app to view and analyze single cell RNAseq data with Seurat
OscarW99/Tutorials
OscarW99/Bioinformatics-web-app
A bioinformatics web app built using streamlit and biopython
OscarW99/multi-reform
A command-line script for editing genome files.
OscarW99/SCGA
A Nextflow pipeline for the analysis of single cell genomics data
OscarW99/Calculator
A simple calculator GUI with tkinter
OscarW99/DataWorkshop
OscarW99/Docker_static_build
OscarW99/fastapi
Prototype social media backend built with FastAPI & Postgresql
OscarW99/FirebrowseR
An R client for broads firehose pipeline, providing TCGA data sets
OscarW99/Genetic-Drift-Simulations
Genetic drift is the change in the frequency of an (gene variant) in a population over multiple generations. An individual’s alleles are a sample of those in present their parents and chance has a role in determining whether that individual will survive and reproduce. Genetic drift may cause gene variants to disappear completely from a population and thereby reduce genetic variation. This code simulates two simple genetic drift models.
OscarW99/Longest-common-motif
Given a text file of sequences in FASTA format, this script will find the longest common sub-string between the sequences
OscarW99/NF_IQ
Nextflow pipeline to test deployment
OscarW99/patterns
A curated collections of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html
OscarW99/ScWGS
A WGS pipeline for validating CRISPR edits in Saccharomyces cerevisiae
OscarW99/sort-FASTQ-file-by-Q-score
Sort illumina paired-end reads in fastq format by their average Q-score.
OscarW99/Sudoku-Solver
Sudoku solver with tkinter GUI
OscarW99/ytscraper