Oshlack/missMethyl

Issues

• Error in GOmeth function

  #22 opened a year ago by MSaadfarooq
  0

• What is does DiffLevene represent exactly?

  #21 opened a year ago by ahdee
  0

• Support on EPIC v2?

  #20 opened 2 years ago by JuliViglino
  0

• KEGG Api changes in gometh function cause 400 bad request error

  #19 opened 2 years ago by TinaXiayanLi
  2

• RUVfit&RUVad usage in 4 samples data set (2 control/2 treatment)

  #11 opened 2 years ago by Haowen24
  2

• Calling missMethyl::gometh from within an R package fails unless that package depends on IlluminaHumanMethylation450kanno.ilmn12.hg19

  #10 opened 2 years ago by snowpong
  2

• Calling gometh(sig.cpg, collection = 'KEGG') results in error, cannot open URL

  #18 opened 2 years ago by sbasrai98
  1

• gometh fails for "KEGG" because .getKEGG uses wrong URL

  #13 opened 2 years ago by snowpong
  8

• Change the genomic.features parameters to custom-made features in goregion function

  #16 opened 2 years ago by AphroditeLibra
  2

• support other assay type?

  #12 opened 2 years ago by wbvguo
  2

• annotation of not cpg-probes

  #9 opened 4 years ago by ctoenhake
  0

• FDR and P.DE as 0 in the output file for the significant GO pathways

  #5 opened 5 years ago by RKSwamy
  4

• gometh is returning DE as floating numbers

  #4 opened 5 years ago by tiagochst
  0

• Bug in version 1.21.3

  #3 opened 5 years ago by tiagochst
  1

• goregion() not exported in Namespace

  #2 opened 5 years ago by timpeters82
  1

• A question about `gometh`

  #1 opened 6 years ago by QianhuiWan
  2