R-scripts to change taxa names in Fasta or tree (NEWICK) files.
The script "replace.R" is called by a file type-specific R script (for NEWICK tree or FASTA sequence file types).
Example files for FASTA file name change are included: names.csv alignment.fasta (output = newname_alignment.fasta)
The function change.taxa.names was created by Sebastian Duchene.