Pinned Repositories
CONTRA
janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
janis-assistant
A language and engine agnostic workflow runner for Janis
janis-bioinformatics
Repository of bioinformatics tools for the pipelines module
janis-core
Core python modules for Janis Pipeline workflow assistant
janis-pipelines
Example pipelines with Janis
janis-translate-examples
Examples of using Janis to translate Galaxy & CWL workflows to Nextflow
janis-workshops
Workshops for the Janis pipeline framework
python-wdlgen
Python classes to loosely generate WDL
scripts
Collection of Peter Mac Scripts
PMCC - Bioinformatics Core's Repositories
PMCC-BioinformaticsCore/janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
PMCC-BioinformaticsCore/janis-core
Core python modules for Janis Pipeline workflow assistant
PMCC-BioinformaticsCore/janis-workshops
Workshops for the Janis pipeline framework
PMCC-BioinformaticsCore/python-wdlgen
Python classes to loosely generate WDL
PMCC-BioinformaticsCore/CONTRA
PMCC-BioinformaticsCore/janis-assistant
A language and engine agnostic workflow runner for Janis
PMCC-BioinformaticsCore/janis-bioinformatics
Repository of bioinformatics tools for the pipelines module
PMCC-BioinformaticsCore/janis-pipelines
Example pipelines with Janis
PMCC-BioinformaticsCore/scripts
Collection of Peter Mac Scripts
PMCC-BioinformaticsCore/janis-training
Janis Online Training Materials
PMCC-BioinformaticsCore/janis-translate-examples
Examples of using Janis to translate Galaxy & CWL workflows to Nextflow
PMCC-BioinformaticsCore/dinoflow
Nextflow workflow for MAC-seq
PMCC-BioinformaticsCore/AI_Beyond_Omics_Workshop
This workshop is scheduled to take place at the The annual Australian Bioinformatics and Computational Biology Society (ABACBS) conference 2024 at University of Sydney on 7th November 2024. This workshop aims to explore the broad applications of artificial intelligence (AI) technologies that are relevant to bioinformaticians.
PMCC-BioinformaticsCore/CWLab
An open-source framework for simplified deployment of the Common Workflow Language using a graphical web interface
PMCC-BioinformaticsCore/janis-germlineVC
Janis Germline Variant Calling Pipeline
PMCC-BioinformaticsCore/janis-patterns
A repository of common Janis patterns
PMCC-BioinformaticsCore/janis-templates
Configurations for Janis to run at specific organisations
PMCC-BioinformaticsCore/janis-unix
Unix tools and data types for Janis
PMCC-BioinformaticsCore/nextflow-intro-workshop
Introduction to Nextflow and Running nf-core Workflows Workshop
PMCC-BioinformaticsCore/seqliner