PNNL-CompBio/SERGIO

Issues

• numpy deprecation

  #16 opened a month ago
  0

• Make fadB a downstream regulatee of fadR

  #15 opened 2 months ago
  1

• Run SERGIO with CRISPRa/i gene perturbations.

  #13 opened 4 months ago
  7

• requirements.txt to install dependencies

  #11 opened 6 months ago
  1

• Regnet in pyro

  #10 opened a year ago
  1

• discretize data to use discrete conditional independence test

  #9 opened a year ago
  1

• Generate a table for all conditional independencies x transformations

  #8 opened a year ago
  0

• Add feature to replace Hill equation dynamics with Lotka-Volterra equation dynamics

  #7 opened a year ago
  0

• get.data.celltype incorrectly parses the columns`

  #6 opened a year ago
  2

• Questions to answer with the tyrR dataset

  #4 opened a year ago
  1

• Convert interactions file

  #3 opened a year ago
  2

• Apply localTests to Ecoli model and keep track of unfaithful conditional independencies as a function of data size

  #2 opened a year ago
  0

• write a function to take as input a conditional independency, a graph, and data, return true or false.

  #1 opened a year ago
  1