PRIDE-Utilities

jmzIdentML

A java library to parse and read mzIdentML files

jmzml

Automatically exported from code.google.com/p/jmzml

jmzReader

Fork of jmzReader library originally developed by PRIDE team

ms-data-core-api

Open-source java library to handle different file format standards for proteomics. Specially ms-data-core-api is good for MetaData representation.

ols-client

Java ols client designed for OLS-Dialog tool

pride-jaxb

A lightweight library for indexing and parsing PRIDE XML files.

pride-mod

PRIDE-Mod is a Java API to handle different modifications such as UNIMOD or PSI-MOD.

pride-ontology

The PRIDE ontology

pride-utilities.github.io

Web Page of PRIDE Utilities including major libraries (ms-data-core-api, pride-utilities, protein inference, pride-mod)

xxindex

A library to index XML files for random access.

PRIDE-Utilities/ms-data-core-api

Open-source java library to handle different file format standards for proteomics. Specially ms-data-core-api is good for MetaData representation.

PRIDE-Utilities/jmzIdentML

A java library to parse and read mzIdentML files

PRIDE-Utilities/jmzml

Automatically exported from code.google.com/p/jmzml

PRIDE-Utilities/jmzReader

Fork of jmzReader library originally developed by PRIDE team

PRIDE-Utilities/pride-mod

PRIDE-Mod is a Java API to handle different modifications such as UNIMOD or PSI-MOD.

PRIDE-Utilities/ols-client

Java ols client designed for OLS-Dialog tool

PRIDE-Utilities/xxindex

A library to index XML files for random access.

PRIDE-Utilities/jmzTab

Java implementation of the PSI-PI mzTab specification

PRIDE-Utilities/pride-jaxb

A lightweight library for indexing and parsing PRIDE XML files.

PRIDE-Utilities/pride-ontology

The PRIDE ontology

PRIDE-Utilities/pride-utilities.github.io

Web Page of PRIDE Utilities including major libraries (ms-data-core-api, pride-utilities, protein inference, pride-mod)

PRIDE-Utilities/track-hub-generator

Generates and updates track hubs for use with the Ensembl Track Hub Registry.

PRIDE-Utilities/jnetCDF

Java library for fast reading of Spectra and Chromatograms in CDF files

PRIDE-Utilities/pride-protein-inference

Library to provide different algorithms for protein inference for PRIDE Utilities.

PRIDE-Utilities/pride-schema-validator

PRIDE-Utilities/pride-utilities

PRIDE-Utilities library contains code shared by many of PRIDE Tools and Libraries.

PRIDE-Utilities/pride-utilities-files

PRIDE-Utilities/pride-xml-handling

POM file for the handling of dependencies in PRIDE Libraries.

PRIDE-Utilities/protein-accession-resolver

PRIDE-Utilities/protein-details-fetcher

Protein details fetcher from Repositories UNIPROT, ENSEMBL

PRIDE-Utilities/pubmed-id-fetcher

PRIDE-Utilities/track-hub-registrator