Pinned Repositories
3D-Printed-Optics-Lab-Parts
Various parts made for fluorescence microscopy + optics work
BenlideChambers
Files and assembly instructions for 3D printed microscopy imaging chambers. Work done by Ben Goodnow for Single Molecule Science at UNSW.
cheesoSPIM
A cheap mesoscopic light sheet and optical projection tomography microscope
ClusDoC
Repository associated with Clus-DoC clustering and degree of colocalization analysis
CO2tin
Pocket-sized CO2 sensor
FSCS
Code associated with fluorescence spectral correlation spectroscopy analysis
NicoLase
Open-source diode laser combiner, fiber launch, and sequencing controller for fluorescence microscopy
SerialMultiplexer
Liquid handling robot for in situ serial multiplexing
smlmsurfacereconstruction
3D surface reconstruction from single molecule localization microscopy data
PRNicovich's Repositories
PRNicovich/NicoLase
Open-source diode laser combiner, fiber launch, and sequencing controller for fluorescence microscopy
PRNicovich/BenlideChambers
Files and assembly instructions for 3D printed microscopy imaging chambers. Work done by Ben Goodnow for Single Molecule Science at UNSW.
PRNicovich/SerialMultiplexer
Liquid handling robot for in situ serial multiplexing
PRNicovich/3D-Printed-Optics-Lab-Parts
Various parts made for fluorescence microscopy + optics work
PRNicovich/cheesoSPIM
A cheap mesoscopic light sheet and optical projection tomography microscope
PRNicovich/ClusDoC
Repository associated with Clus-DoC clustering and degree of colocalization analysis
PRNicovich/smlmsurfacereconstruction
3D surface reconstruction from single molecule localization microscopy data
PRNicovich/CO2tin
Pocket-sized CO2 sensor
PRNicovich/FSCS
Code associated with fluorescence spectral correlation spectroscopy analysis
PRNicovich/makeSMLMFrames
Simulation code for SMLM data starting with experimental detection event table
PRNicovich/NPROT.2016.166
Code associated with publication "Turning single-molecule localization microscopy into a quantitative bioanalytical tool" Philip R Nicovich, Dylan M Owen & Katharina Gaus Nature Protocols volume 12, pages 453–460 (2017)
PRNicovich/PAVesT
Photo-activated vesicle tracker MATLAB GUI
PRNicovich/blogwork
Scripts from my blog
PRNicovich/ccf_registration_2020
CCF Registration Competition 2020
PRNicovich/cell_count
PRNicovich/Continuous_FRC_SMLM
Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)
PRNicovich/DA8568C
DA8568C Arduino Library
PRNicovich/DeltaGP
MATLAB code associated with DeltaGP analysis
PRNicovich/GALAH
GALAH GUI interface for analysis of filaments in fluorescence microscopy
PRNicovich/HouseProjects
Around-the-house woodworking and design projects
PRNicovich/Hx711_circuitpython
Forking HX711 code to work w/ clearing 'bot
PRNicovich/matrixTicker
Firmware for 8x8 animated LED matrix
PRNicovich/NBT-RA37689
MATLAB code associated with Ma, et al. "A FRET sensor enables quantitative measurements of membrane charges in live cells."
PRNicovich/NMETH-C19079A
Custom analysis scripts used in Nature Methods publication NMETH-C19079A
PRNicovich/olympus_organizer
PRNicovich/pyqtgraph
pyqtgraph main development repository
PRNicovich/RaspberryPi
Python for Raspberry Pi
PRNicovich/singleMoleculeSurfaceEvaluation
PRNicovich/storm-control
Zhuang lab microscope control software