/SVGbench

Evaluating spatially variable gene detection methods for spatial transcriptomics data

Primary LanguageRCreative Commons Attribution 4.0 InternationalCC-BY-4.0

DOI

SVGbench

This repo hosts the source code and scripts for evaluating spatially variable gene detection methods for spatial transcriptomics data.

Fig1_evaluation workflow_v4

All scripts containing the pre-processing, functions to run all methods in the manuscript and plots are provided.

Reference:

Carissa Chen+, Hani Jieun Kim+,*, and Pengyi Yang* (2024) Evaluating spatially variable gene detection methods for spatial transcriptomics data, Genome Biology, 25, 18, FullText.