Pacomito
Bioinformatician at CHUV - Lausanne - Working on Spatial Proteomics in Cancer
Insitut CurieFrance
Pinned Repositories
ALTRE
ALTered Regulatory Elements
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
CELL-technical-seminars
State of the art for the different single-cell usual analysis steps
example-voting-app
Example Docker Compose app
lsml19
Practical sessions for the 2019 Large Scale Machine Learning course at MINES ParisTech
MultiQC_scChIP_seq
MultiQC plugin for scChIPseq
oneliners
Useful bash one-liners for bioinformatics.
pacomito.github.io
Pacomito's Repositories
Pacomito/ALTRE
ALTered Regulatory Elements
Pacomito/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Pacomito/bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
Pacomito/CELL-technical-seminars
State of the art for the different single-cell usual analysis steps
Pacomito/example-voting-app
Example Docker Compose app
Pacomito/lsml19
Practical sessions for the 2019 Large Scale Machine Learning course at MINES ParisTech
Pacomito/MultiQC_scChIP_seq
MultiQC plugin for scChIPseq
Pacomito/oneliners
Useful bash one-liners for bioinformatics.
Pacomito/pacomito.github.io
Pacomito/Palimpsest
An R package for studying mutational and structural variant signatures along clonal evolution in cancer.
Pacomito/scATAC-benchmarking
Benchmarking computational single cell ATAC-seq methods
Pacomito/signac
R toolkit for the analysis of single-cell chromatin data
Pacomito/sircel
Identify cell barcodes from single-cell genomics sequencing experiments
Pacomito/Skin-Atlas
A highly multiplexed protein fluorescent imaging of 51 patients with malignant and benign non communicable skin disease (NCD).
Pacomito/test_bam_slow
Bam file test for deeptools bamCoverage 3.10
Pacomito/Universal-StarDist-for-QuPath
Transfer trained StarDist models across imaging modalities