Papatheodorou Group

BENGAL

Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets

BENGAL_reproducibility

BENchmark inteGrAtion strategies for cross-species anaLysis of single cell RNA sequencing data

CATD_reproducibility

Notebooks and scripts for reproducing CATD paper

CATD_snakemake

Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datasets

GBC_SUM159PT_paper

GBC_SUM159PT_paper_figures

GeneSpectra

GENE classification and cross-SPECies comparison of cell Types with single cell RNA-seq data

GeneSpectraKG

Biocypher KG for GeneSpectra results

scGOclust

Gene ontology terms to compare single cell RNA-seq data

scOntoMatch

scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies

Papatheodorou-Group/BENGAL

Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets

Papatheodorou-Group/CATD_snakemake

Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datasets

Papatheodorou-Group/scGOclust

Gene ontology terms to compare single cell RNA-seq data

Papatheodorou-Group/scOntoMatch

scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies

Papatheodorou-Group/BENGAL_reproducibility

BENchmark inteGrAtion strategies for cross-species anaLysis of single cell RNA sequencing data

Papatheodorou-Group/CATD_reproducibility

Notebooks and scripts for reproducing CATD paper

Papatheodorou-Group/GBC_SUM159PT_paper

Papatheodorou-Group/GBC_SUM159PT_paper_figures

Papatheodorou-Group/GeneSpectra

GENE classification and cross-SPECies comparison of cell Types with single cell RNA-seq data

Papatheodorou-Group/GeneSpectraKG

Biocypher KG for GeneSpectra results

Papatheodorou-Group/scGOclust_reproducibility

Notebooks and files from the scGOclust study