Parkerdow's Stars
napari/napari
napari: a fast, interactive, multi-dimensional image viewer for python
GuoBioinfoLab/CATT
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
s-andrews/FastQC
A quality control analysis tool for high throughput sequencing data
jeertmans/manim-slides
Tool for live presentations using manim
antigenomics/vdjmatch
⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
scverse/scanpy
Single-cell analysis in Python. Scales to >1M cells.
scverse/scirpy
A scanpy extension to analyse single-cell TCR and BCR data.
zktuong/dandelion
dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
milaboratory/mitools
MiTools: yet another Next Generation Sequencing (NGS) data processing tool (based on MiLib)
Teichlab/tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
liulab-dfci/TRUST4
TCR and BCR assembly from RNA-seq data
alexdobin/STAR
RNA-seq aligner
lh3/seqtk
Toolkit for processing sequences in FASTA/Q formats
Japrin/STARTRAC
STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
sacdallago/bio_embeddings
Get protein embeddings from protein sequences
emmijokinen/TCRconv
TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TCRs and convolutional neural networks for the prediction.
GfellerLab/MixTCRpred
Predictor of TCR-epitope interactions
yangkky/Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
ncbi/sra-tools
SRA Tools
ManimCommunity/manim
A community-maintained Python framework for creating mathematical animations.
GuoBioinfoLab/DeRR
A tool for identification Dual-TCR in scRNA-Seq data Topics Resources
wukevin/tcr-bert
Large language modeling applied to T-cell receptor (TCR) sequences.
agemagician/ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
Parkerdow/TRUST4
TCR and BCR assembly from RNA-seq data
motion-canvas/motion-canvas
Visualize Your Ideas With Code
sidhomj/DeepTCR
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data