Pinned Repositories
AnalysisGuidelines
CodeStyle
Guidelines for coding style across our projects.
Extractor
Tool for creating static mapping files from multiples data types to the reactions and pathways in the Reactome graph database.
MappingFiles
Tables create with Variant Effect Predictor (VEP) to map from genetic variants to gene names and Swiss Prot accessions.
Methods
Java implementation of Methods to search and analyse pathways
Model
Set of classes to represent the objects related to pathway analysis
PathwayMatcher
PathwayMatcher is a free, open-source software to search for pathways related to a list of genes, proteins or proteoforms in Reactome.
PathwayMatcher_Dev
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
PathwayStructure
ProteoformNetworks
Tests to prove usefulness of proteoform networks
PathwayAnalysisPlatform's Repositories
PathwayAnalysisPlatform/PathwayMatcher_Dev
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
PathwayAnalysisPlatform/PathwayMatcher
PathwayMatcher is a free, open-source software to search for pathways related to a list of genes, proteins or proteoforms in Reactome.
PathwayAnalysisPlatform/PathwayStructure
PathwayAnalysisPlatform/ProteoformNetworks
Tests to prove usefulness of proteoform networks
PathwayAnalysisPlatform/AnalysisGuidelines
PathwayAnalysisPlatform/CodeStyle
Guidelines for coding style across our projects.
PathwayAnalysisPlatform/Extractor
Tool for creating static mapping files from multiples data types to the reactions and pathways in the Reactome graph database.
PathwayAnalysisPlatform/MappingFiles
Tables create with Variant Effect Predictor (VEP) to map from genetic variants to gene names and Swiss Prot accessions.
PathwayAnalysisPlatform/Methods
Java implementation of Methods to search and analyse pathways
PathwayAnalysisPlatform/Model
Set of classes to represent the objects related to pathway analysis
PathwayAnalysisPlatform/PathwayMatcher_Publication
Source code, data files and figures for the PathwayMatcher manuscript.
PathwayAnalysisPlatform/Networks
Protein and proteoform interaction networks created from Pathways in Reactome.
PathwayAnalysisPlatform/PathFinder
PathwayAnalysisPlatform/ProteoformNetworks_resources
Data files and result tables for the project ProteoformNetworks, which compares the overlap between trait modules at gene and proteoform level.