Pinned Repositories
causal-priors-extractor
This project extracts causal priors from Pathway Commons database to use in CausalPath.
causalpath
A project for exploring differentially active signaling paths related to proteomics datasets
causalpath-newt-webserver
causalpath-webserver
Web Server for CausalPath
frext-to-biopax
Convertor from REACH frext format to BioPAX
misc2
misc is dead! long live the misc2
mutex
Automatically exported from code.google.com/p/mutex
mutex-de-novo
Mutual exclusivity analysis developed for de novo mutations in autism datasets.
tf-activity
For inferring differential transcription factor activity using RNA expression data and transcriptional network.
utility
Contains code that is often shared by many projects.
PathwayAndDataAnalysis's Repositories
PathwayAndDataAnalysis/causalpath
A project for exploring differentially active signaling paths related to proteomics datasets
PathwayAndDataAnalysis/mutex
Automatically exported from code.google.com/p/mutex
PathwayAndDataAnalysis/causalpath-webserver
Web Server for CausalPath
PathwayAndDataAnalysis/causalpath-newt-webserver
PathwayAndDataAnalysis/frext-to-biopax
Convertor from REACH frext format to BioPAX
PathwayAndDataAnalysis/misc2
misc is dead! long live the misc2
PathwayAndDataAnalysis/mutex-de-novo
Mutual exclusivity analysis developed for de novo mutations in autism datasets.
PathwayAndDataAnalysis/tf-activity
For inferring differential transcription factor activity using RNA expression data and transcriptional network.
PathwayAndDataAnalysis/utility
Contains code that is often shared by many projects.
PathwayAndDataAnalysis/cancer-network
For generating a network that shows the relations of the observed gene alterations in a cancer patient to the known cancer genes or other custom gene sets.
PathwayAndDataAnalysis/causal-priors-extractor
This project extracts causal priors from Pathway Commons database to use in CausalPath.
PathwayAndDataAnalysis/Finkle-PHYS-479
PathwayAndDataAnalysis/misc
Collection of several basic code
PathwayAndDataAnalysis/misc-helpers
Several miscellaneous python code for data processing and analysis.
PathwayAndDataAnalysis/mutation-patterns
For detecting potentially cancer-driver mutations based on their distribution compared to other genomic profiles.
PathwayAndDataAnalysis/single-cell-pathway-analysis
A webserver for pathway analysis of single cell trajectories
PathwayAndDataAnalysis/TF-Analysis
PathwayAndDataAnalysis/causality
Automatically exported from code.google.com/p/causality
PathwayAndDataAnalysis/cptac-gbm-survival-signature
In this analysis, we check if the survival transcriptomic signature in TCGA GBM cohort is also visible in the CPTAC GBM cohort.
PathwayAndDataAnalysis/cytoscape.js
Graph theory (a.k.a. network) library for analysis and visualisation (compatible with CommonJS/Node.js/Browserify/Webpack, AMD/Require.js, npm, Bower, jspm, Meteor/Atmosphere, jQuery, and plain JS/JavaScript)
PathwayAndDataAnalysis/firehose-parser
A parser for Broad Firehose
PathwayAndDataAnalysis/gsplot
Gene set viewer
PathwayAndDataAnalysis/modulators
For discovering and classifying modulators of gene expression
PathwayAndDataAnalysis/protein-site-motif
This project aims to identify motifs in protein phosphorylation sites.
PathwayAndDataAnalysis/repo
Repository for maven jars and other resources.
PathwayAndDataAnalysis/resource
Collection of code for accessing several data resources.
PathwayAndDataAnalysis/RNAToProtein
A linear regression framework for predicting proteomic values from transcriptomic data.
PathwayAndDataAnalysis/sif-explorer
A web service for graph theoretic exploration of SIF networks.
PathwayAndDataAnalysis/single-cell-pathway-analysis-client
PathwayAndDataAnalysis/TF-Prediction-Webserver