Pathway Commons
A network biology resource for biological pathway information and software.
Toronto, New York City, Boston, Portland
Pinned Repositories
about
Pathway Commons Home Page (/about/)
app-ui
Web UI for accessing Pathway Commons data
chibe
Pathway visualization and analysis tool for Pathway Commons and other BioPAX data
cpath2
Biological pathway data integration and access platform (Pathway Commons)
CyPath2
Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.
cytoscape-sbgn-stylesheet
View biological networks via Cytoscape.js and sbgn-ml
factoid
A project to capture biological pathway data from academic papers
grounding-search
A biological entity grounding search service
guide
Resource for pathway analysis and Pathway Commons
semantic-search
A simple semantic search engine for scientific papers.
Pathway Commons's Repositories
PathwayCommons/cytoscape-sbgn-stylesheet
View biological networks via Cytoscape.js and sbgn-ml
PathwayCommons/factoid
A project to capture biological pathway data from academic papers
PathwayCommons/semantic-search
A simple semantic search engine for scientific papers.
PathwayCommons/chibe
Pathway visualization and analysis tool for Pathway Commons and other BioPAX data
PathwayCommons/grounding-search
A biological entity grounding search service
PathwayCommons/pcviz
Pathway Commons Bio Network Visualizer
PathwayCommons/cpath2
Biological pathway data integration and access platform (Pathway Commons)
PathwayCommons/sbgnml-to-cytoscape
An npm module that converts xml based SBGN files to JSON for Cytoscape.js
PathwayCommons/guide
Resource for pathway analysis and Pathway Commons
PathwayCommons/about
Pathway Commons Home Page (/about/)
PathwayCommons/app-ui
Web UI for accessing Pathway Commons data
PathwayCommons/CyPath2
Cytoscape 3 app that connects to PC2 (cpath2) and imports BioPAX sub-networks into Cytoscape 3 for analysis.
PathwayCommons/drugbank-to-biopax
DrugBank to BioPAX Level3 data converter.
PathwayCommons/factoid-converters
Web services for Factoid project to convert between JSON, BioPAX, SBGN data formats
PathwayCommons/ncbiutils
A wrapper for retrieving records from PubMed
PathwayCommons/ctd-to-biopax
Comparative Toxicogenomics Database (CTD) to BioPAX Level3 data converter.
PathwayCommons/hyper-recent
Hyper-recent article feed
PathwayCommons/mirtarbase-to-biopax
MiRTarBase to BioPAX Level3 data converter.
PathwayCommons/reconx-to-biopax
SBML to BioPAX Level3 converter, specific to the Recon2 data.
PathwayCommons/sifgraph
Modeling and querying support for SIF graphs
PathwayCommons/sifgraph-server
Pathway Commons binary SIF graph web service
PathwayCommons/pathway-abstract-classifier
A tool to classify journal abstracts with pathway content.
PathwayCommons/pubmed-dl
PathwayCommons/chilay-sbgn
Chisio Layout (ChiLay) graph layout framework for SBGN
PathwayCommons/classifier-pipeline
A workflow for classifying articles
PathwayCommons/cpath2-client
PathwayCommons/msigdb-to-biopax
MSigDB (human C3 TFT motif gene sets only) to BioPAX Level3 data converter.
PathwayCommons/pcapi
The Web API Docs App
PathwayCommons/rethinkdb-backup
Enables a client to dump and retrieve data from a RethinkDB instance
PathwayCommons/rethinkdb-docker
A Docker image that provides a RethinkDB database