Pinned Repositories
BSMN_Project
Genome_Project
K87_Project
Longboard
Longboard is an scalable, cloud based deep learning pipeline for the detection of somatic LINE-1 retrotransposition events from SLAV-Seq datasets. Longboard takes SLAV-Seq bam file(s) aligned to Hs37d5 as input and returns a vcf formated file of predicted somatic insertions.
MS_Project
SZ_Aging_Project
SZ_Twins_Project
PatrickJReed's Repositories
PatrickJReed/BSMN_Project
PatrickJReed/Genome_Project
PatrickJReed/K87_Project
PatrickJReed/Longboard
Longboard is an scalable, cloud based deep learning pipeline for the detection of somatic LINE-1 retrotransposition events from SLAV-Seq datasets. Longboard takes SLAV-Seq bam file(s) aligned to Hs37d5 as input and returns a vcf formated file of predicted somatic insertions.
PatrickJReed/MS_Project
PatrickJReed/SZ_Aging_Project
PatrickJReed/SZ_Twins_Project
PatrickJReed/DeepLearningDream
PatrickJReed/DylanR
PatrickJReed/Exome
General Scripts for the analysis of Exome Seq data in the context on Mendelian Disorders
PatrickJReed/Inigo
PatrickJReed/jupyter-genomics
A collection of Jupyter notebooks authored by the UCSD Center for Computational Biology & Bioinformatics (http://compbio.ucsd.edu). These include methods on utilizing cloud computing resources and analysis of data from next-generation sequencing, systems biology, and microbiome.
PatrickJReed/mcclintock
Meta-pipeline to identify transposable element insertions using next generation sequencing data
PatrickJReed/mnist_png
MNIST converted to PNG format
PatrickJReed/PenetranceProject
Main Scripts and some ref files for used by Me.
PatrickJReed/Repair-Seq
Repaired-Seq Data Analysis
PatrickJReed/scripts
disheveled code
PatrickJReed/tensorflow
Computation using data flow graphs for scalable machine learning
PatrickJReed/TEPID
Transposable element polymorphism identification
PatrickJReed/ubuntu
Ubuntu Dockerfile for trusted automated Docker builds.