Pinned Repositories
2022-SysBioCourse-ACSB
Teaching material for 2022 SysBio Course
CellOracle
This is the alpha version of the CellOracle package
CollecTRI
Gene regulatory network containing signed transcription factor-target gene interactions
composition_stats
Python package for compositional data analysis
progeny
R package for Pathway RespOnsive GENe activity inference
single-cell-best-practices
This project is work in progress! https://www.sc-best-practices.org
tab-VAE
VAE example using TF 2.0 and using tabular data
transcriptutorial
This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
decoupleR
R package to infer biological activities from omics data using a collection of methods.
decoupler-py
Python package to perform enrichment analysis from omics data.
PauBadiaM's Repositories
PauBadiaM/progeny
R package for Pathway RespOnsive GENe activity inference
PauBadiaM/single-cell-best-practices
This project is work in progress! https://www.sc-best-practices.org
PauBadiaM/tab-VAE
VAE example using TF 2.0 and using tabular data
PauBadiaM/transcriptutorial
This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
PauBadiaM/2022-SysBioCourse-ACSB
Teaching material for 2022 SysBio Course
PauBadiaM/CellOracle
This is the alpha version of the CellOracle package
PauBadiaM/CollecTRI
Gene regulatory network containing signed transcription factor-target gene interactions
PauBadiaM/composition_stats
Python package for compositional data analysis
PauBadiaM/decoupleR
An R package to decouple gene sets and statistics of functional genomics tools
PauBadiaM/dorothea
R package to access DoRothEA's regulons
PauBadiaM/Macrocomplex-builder
PauBadiaM/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
PauBadiaM/SIDL
Shallow Introduction to Deep Learning
PauBadiaM/liana-py
LIANA+: an all-in-one framework for cell-cell communication
PauBadiaM/Pando
Multiome GRN inference.
PauBadiaM/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
PauBadiaM/test_CI_fisher
Test repo to reproduce the CI error with fisher as a dependancy