Pinned Repositories
cactus
Official home of genome aligner based upon notion of Cactus graphs
Ana-Maria-Lab-improved
AnalisisMetilacion_Omaya
AnaMariaLab.github.io
appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
Bioinformatica
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
Bioinformatics-training-collection
A collection of resources for learning about tools and languages related to Bioinformatics
BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
De-Bruijn-Graph-Genome-Visualization
Builds de Bruijn graph from genome reads and visualizes in browser using vis.js
PavelEG's Repositories
PavelEG/integrity
PavelEG/vormir
omic data analysis and beyond
PavelEG/RNAseq2024
PavelEG/Improved-genome-assembly-of-the-whiteleg-shrimp-Penaeus-Litopenaeus-vannamei
Improved genome assembly of the whiteleg shrimp Penaeus (Litopenaeus) vannamei using long- and short-read sequences from public databases
PavelEG/AnalisisMetilacion_Omaya
PavelEG/BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
PavelEG/GenomicaFuncionalLab
Repositorio para la pagina del Laboratorio de Genomica Funcional de CICESE
PavelEG/scidataflow
PavelEG/fcs
Foreign Contamination Screening caller scripts and documentation
PavelEG/diamond
Accelerated BLAST compatible local sequence aligner.
PavelEG/cactus
Official home of genome aligner based upon notion of Cactus graphs
PavelEG/GWAS_GCTA
PavelEG/sequence-stats
Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming contigs and converting FASTQ to FASTA. Written in Bash. All in one place.
PavelEG/NGenomeSyn
Any Way to Show Multi genomic Synteny
PavelEG/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
PavelEG/pema
PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
PavelEG/Bioinformatica
PavelEG/GTseq-Pipeline
A series of perl and python scripts for generating genotypes from NGS fastq files from GTseq library sequencing.
PavelEG/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
PavelEG/Bioinformatics-training-collection
A collection of resources for learning about tools and languages related to Bioinformatics
PavelEG/my.perl.scripts
A collection of my perl scripts that I usually use for transcriptomics analysis purposes
PavelEG/GenomicaFuncionalTest
PavelEG/RefFreeDMA
Reference Genome Independent Differential DNA Methylation Analysis
PavelEG/pavelGalindo.github.io
PavelEG/tsviz
An RStudio addin to provide easy and interactive time series visualization
PavelEG/bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
PavelEG/E-MTAB-6141
Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
PavelEG/NormqPCR
Analyse qPCR data including selection of optimal reference gene(s) and normalisation
PavelEG/De-Bruijn-Graph-Genome-Visualization
Builds de Bruijn graph from genome reads and visualizes in browser using vis.js
PavelEG/appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course