PavlidisLab/GemmaDE

Issues

• New workflow

  #62 opened a year ago by oganm
  0

• nullset changes

  #61 opened a year ago by oganm
  0

• Assessment the affects of permutations

  #60 opened 2 years ago by oganm
  0

• Skip inference on EFO

  #59 opened 2 years ago by ppavlidis
  0

• precompute tags generates redundant tags

  #56 opened 2 years ago by oganm
  2

• Removal of individual studies from the corpus

  #57 opened 2 years ago by oganm
  0

• "file upload" feature needs work

  #58 opened 2 years ago by ppavlidis
  0

• NULL generations for different options

  #55 opened 2 years ago by oganm
  1

• Bottleneck

  #30 opened 2 years ago by oganm
  0

• 28 July Meeting Points

  #29 opened 2 years ago by oganm
  2

• Gene contributions window doesn't seem to be working properly

  #54 opened 2 years ago by oganm
  0

• Improve readability of the download button

  #47 opened 2 years ago by oganm
  0

• Filter genes based on which taxons are selected

  #45 opened 2 years ago by oganm
  0

• Use a widget instead of loose javascript code and changes to shiny for tomselect

  #53 opened 2 years ago by oganm
  0

• Search field, remove text when match is found

  #43 opened 2 years ago by oganm
  1

• Regenerate data with clean cache

  #51 opened 2 years ago by oganm
  0

• Evaluate the effects of Geeq scores

  #52 opened 2 years ago by oganm
  0

• Make checkboxes bore readable

  #36 opened 2 years ago by oganm
  0

• Include supporting experiments in the downloaded file

  #42 opened 2 years ago by oganm
  0

• Move progress bar to the middle of the screen

  #46 opened 2 years ago by oganm
  0

• API-package pair

  #50 opened 2 years ago by oganm
  0

• Packaging

  #31 opened 2 years ago by oganm
  0

• Clean human data from mouse

  #38 opened 2 years ago by oganm
  2

• Expose more details about the results

  #49 opened 2 years ago by oganm
  0

• Create a help/about page

  #48 opened 2 years ago by oganm
  0

• Trimming of unhelpful fields

  #44 opened 2 years ago by oganm
  1

• core_split in analysis results as a gene

  #41 opened 2 years ago by oganm
  0

• Test statistic range

  #39 opened 2 years ago by oganm
  0

• Re-creation of the thesis results with the new data and API

  #40 opened 2 years ago by oganm
  0

• Multifunctionality in the analysis

  #37 opened 2 years ago by oganm
  0

• Upgrade to new Gemma API

  #12 opened 2 years ago by jsicherman
  1

• Clarity of current search paramaters

  #34 opened 2 years ago by oganm
  1

• Drugbank xml

  #33 opened 2 years ago by oganm
  2

• Unclear line in process.R

  #32 opened 2 years ago by oganm
  3

• Subsets not implemented

  #10 opened 3 years ago by jsicherman
  2

• Unknown behavior on non-standard searches

  #8 opened 4 years ago by jsicherman
  1

• User interface fixes

  #18 opened 3 years ago by ppavlidis
  4

• Provide a better means for drilling into underlying data

  #20 opened 3 years ago by ppavlidis
  1

• Make test statistic relative to the number of genes

  #21 opened 2 years ago by ppavlidis
  1

• Explanations on results table headers

  #15 opened 2 years ago by yavyx
  1

• Avoid grouping of experiments by EFO term "experimental process"

  #19 opened 3 years ago by ppavlidis
  1

• Popup error message

  #22 opened 3 years ago by dima-v-v
  2

• Gene search not working

  #17 opened 3 years ago by yavyx
  2

• Replace gene contributions radial plot

  #16 opened 3 years ago by yavyx
  0

• Radar plot

  #11 opened 3 years ago by jsicherman
  0

• Reset button duplicates search box

  #13 opened 3 years ago by yavyx
  0

• Loading animation on app start

  #14 opened 3 years ago by yavyx
  0

• GO enrichment

  #9 opened 3 years ago by jsicherman
  1

• Wordcloud can write over itself

  #7 opened 3 years ago by jsicherman
  1

• Support multiprocess Shiny sessions

  #6 opened 4 years ago by jsicherman
  1