PavlidisLab/ermineR

Issues

• Is it possible to download the gene to function table without using the statistical procedure in the package?

  #23 opened 3 months ago by garyzhubc
  1

• Random failures on travis

  #10 opened 4 months ago by oganm
  0

• Mac users needs to have java SDK not just java. add to documentation

  #12 opened 4 months ago by oganm
  0

• Getting reports of spontaneous change of permissions for the jar file. Investigate

  #13 opened 4 months ago by oganm
  0

• I have rJava installed and runned the `chmod +x` command but still wasn't able to get the pathway information that I wanted.

  #24 opened 4 months ago by garyzhubc
  2

• Permission denied

  #22 opened 3 years ago by Nayrouz109
  2

• Broken link - Cannot find URL

  #21 opened 4 years ago by zhemingfan
  3

• Annotation files should not be downloaded to the users home filespace

  #11 opened 4 years ago by oganm
  0

• Custom gene sets doesn't seem to work on windows

  #14 opened 4 years ago by oganm
  0

• Consistent failures in appveyor

  #15 opened 4 years ago by oganm
  0

• Problem installing ermineR

  #20 opened 4 years ago by samschaf
  2

• replace annotation functions with gemmaAPI imports

  #19 opened 5 years ago by oganm
  0

• To CRAN

  #18 opened 6 years ago by oganm
  0

• Consider supporting gene2go for automatic gene annotation when gemma is unavailable

  #17 opened 6 years ago by oganm
  0

• Example of non-GO enrichment

  #16 opened 6 years ago by oganm
  0

• Interaction with other annotation libraries for GO

  #3 opened 7 years ago by oganm
  3

• Get test cases from ermineJ repo

  #7 opened 7 years ago by oganm
  0

• Update to 3.1

  #9 opened 7 years ago by oganm
  1

• Gene list inputs

  #8 opened 7 years ago by oganm
  0

• Various bugs/suggestions

  #5 opened 7 years ago by ppavlidis
  4

• Check in a clean environment to see how hard is it to install java

  #4 opened 7 years ago by oganm
  0

• Seek java in Windows

  #6 opened 7 years ago by oganm
  1

• Threshold for ORA needs to be implemented

  #2 opened 7 years ago by oganm
  0

• Questions for paul

  #1 opened 7 years ago by oganm
  1